Is the version 3.4.0 the latest version of the pipelines which default to FSL mcflirt?
Thanks, -L Sent from my iPhone > On Nov 8, 2017, at 4:55 PM, Glasser, Matthew <[email protected]> wrote: > > I would use the latest version of the pipelines which default to FSL mcflirt > because some folks had been seeing this issue. > > Peace, > > Matt. > > From: <[email protected]> on behalf of "Sanchez, Juan > (NYSPI)" <[email protected]> > Date: Wednesday, November 8, 2017 at 3:41 PM > To: "[email protected]" <[email protected]>, > "[email protected]" <[email protected]>, > "[email protected]" <[email protected]>, > "[email protected]" <[email protected]>, > "[email protected]" <[email protected]>, > "[email protected]" <[email protected]>, > "[email protected]" <[email protected]> > Subject: [HCP-Users] mcflirt_acc in ABCD > > Dear all, > > We are using pipelines version 3.4. Using the TOPUP distortion correction we > are getting very good Epi to T1 co-registration, however it seems that there > is intermittent motion in the processed data that is not present in the raw > data. > > > > This is occuring during MotionCorrection_FLIRTbased.sh > > the fMRI_gdc.nii.gz shows no motion between volumes, however the fMRI_mc > shows motion in the entire brain (around a 1mm shift) see attached qc png > > This error was present using both mcflirt.sh and mcflirt_acc.sh > > I used fsl mcflirt with these inputs and the motion error was gone. > > Any suggestions on how to edit the mcflirt_acc.sh or why this may be > happening? > > thanks > Juan Sanchez-Pena > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
