Hi all, I am using wb_shortcuts to map from native individual Freesurfer space to cifti format. I successfully ran Freesurfer's recon-all on my subjects. I downloaded the standard_mesh_atlases, and intended to map the individual lh.white and lh.pial (converted to .gii) to the fs_LR-deformed_to-fsaverage.L.sphere.32k_fs_LR.surf.gii.
This is the command that I ran: wb_shortcuts -freesurfer-resample-prep $SUBJECTS_DIR/SPCh061/surf/lh.white.gii $SUBJECTS_DIR/SPCh061/surf/lh.pial.gii $SUBJECTS_DIR/SPCh061/surf/lh.sphere.reg.gii /Users/newportlab/Applications/workbench/standard_mesh_atlases/resample_fsaverage/fs_LR-deformed_to-fsaverage.L.sphere.32k_fs_LR.surf.gii lh.midthickness.surf.gii SPCh061.lh.midthickness.32k_fs_LR.surf.gii lh.sphere.reg.surf.gii And this was the resulting error: dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Users/newportlab/Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib dyld: Symbol not found: ___emutls_get_address Referenced from: /Users/newportlab/Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib /Users/newportlab/Applications/workbench/bin_macosx64/wb_shortcuts: line 285: 22711 Abort trap: 6 I have tried installing and testing MacPorts, and running fs_update, with no success. Sierra has given Freesurfer users some grief, but since I have been able to run other Freesurfer commands successfully, I am wondering if it is something within the wb_shortcuts that is incompatible. Does anyone know of a work-around for this? Thank you! Kelly -- Kelly Martin Graduate Student Interdisciplinary Program in Neuroscience Georgetown University _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
