Hello List and Lello Matthew,
I found a few versions of your new atlas in volumetric space.
(e.g.
https://figshare.com/articles/HCP-MMP1_0_projected_on_MNI2009a_GM_volumetric_in_NIfTI_format/3501911)
<https://figshare.com/articles/HCP-MMP1_0_projected_on_MNI2009a_GM_volumetric_in_NIfTI_format/3501911>
I know it has alignment problems in volumetric space, so I would like
your opinion on the following: do you feel it is still "good enough"
(in volumetric space) to generate whole-brain connectomes with MRtrix
(multi tissue CSD+SIFT) using the parcels as seeds? Or would you advise
even against doing that?
Thanks a lot!
Nicola
On 11/02/2017 02:21 AM, Glasser, Matthew wrote:
No they didn’t get saved out.
Matt.
From: Amanda Mejia <[email protected] <mailto:[email protected]>>
Date: Wednesday, November 1, 2017 at 5:30 PM
To: Matt Glasser <[email protected] <mailto:[email protected]>>
Cc: "[email protected]
<mailto:[email protected]>" <[email protected]
<mailto:[email protected]>>
Subject: Re: [HCP-Users] Glasser atlas network labels
Gotcha. Are the regression coefficients representing that association
available anywhere?
On Wed, Nov 1, 2017 at 6:25 PM, Glasser, Matthew <[email protected]
<mailto:[email protected]>> wrote:
Hi Amanda,
They aren’t really network labels, but rather there are some
groups of areas whose mean time courses are regressed into all of
the areas to see the extent to which each area is associated with
each group.
Matt.
From: <[email protected]
<mailto:[email protected]>> on behalf of
Amanda Mejia <[email protected] <mailto:[email protected]>>
Date: Wednesday, November 1, 2017 at 2:35 PM
To: "[email protected]
<mailto:[email protected]>"
<[email protected] <mailto:[email protected]>>
Subject: [HCP-Users] Glasser atlas network labels
Hi,
I am using the Glasser parcellation (from Glasser, et al. “A
Multi-Modal Parcellation of Human Cerebral Cortex.” Nature (2016):
171–178.) and would like to group the parcels into networks. In
Figure 3 of the paper, the parcels are grouped into five networks
(sensory/motor, auditory, visual, task positive and task
negative). Is it possible to obtain these network labels?
Amanda
--
AMANDA F MEJIA, PhD
Assistant Professor
Department of Statistics
Indiana University Bloomington
https://mandymejia.wordpress.com/ <https://mandymejia.wordpress.com/>
_______________________________________________
HCP-Users mailing list
[email protected] <mailto:[email protected]>
http://lists.humanconnectome.org/mailman/listinfo/hcp-users
<http://lists.humanconnectome.org/mailman/listinfo/hcp-users>
--
AMANDA F MEJIA, PhD
Assistant Professor
Department of Statistics
Indiana University Bloomington
https://mandymejia.wordpress.com/
_______________________________________________
HCP-Users mailing list
[email protected]
http://lists.humanconnectome.org/mailman/listinfo/hcp-users
_______________________________________________
HCP-Users mailing list
[email protected]
http://lists.humanconnectome.org/mailman/listinfo/hcp-users
