Dear HCP experts,
I have a question about registering the HCP diffusion data to the standard
space for cross-subject analysis. I see the file "acpc_dc2standard.nii.gz" in
the folder ${StudyFolder}/${Subject}/MNINonLinear/xfms/
Would you please suggest if the following command would be appropriate:
applywarp --ref=MNI152_T1_1mm --in=dti_FA.nii.gz --warp=acpc_dc2standard.nii.gz
--out=dti_FA_warped.nii.gz
Should I use any reference image specific for the HCP data instead of
"MNI152_T1_1mm"? After this registration step, I guess the white matter voxels
in the file "dti_FA_warped.nii.gz" should be comparable across different
subjects? Thank you.
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