If you are trying to display the data you need some surface GIFTI files too.
Peace, Matt. From: "Gilman, Jodi" <[email protected]<mailto:[email protected]>> Date: Friday, December 22, 2017 at 8:37 AM To: Matt Glasser <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>>, "Ho, Wilson Christopher" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] group comparison in myelin maps Hi Matt, We concatenated the myelin maps into one .dscalar.nii map for each group. I cannot open them, however, I think I am missing other files that I need. Which other files do I need to generate? A volume file? Thanks, Jodi Jodi Gilman, Ph.D. Assistant Professor, Harvard Medical School Center for Addiction Medicine Massachusetts General Hospital 101 Merrimac St. Boston, MA 02114 Tel.: 617-643-7293 Fax: 617-643-1998 On Dec 14, 2017, at 1:14 PM, Gilman, Jodi <[email protected]<mailto:[email protected]>> wrote: Thank you, Matt. Do you have an example of a -cifti-concatenate script? I keep getting errors, I don’t think I’m getting the syntax correct. Thanks!! Jodi Gilman, Ph.D. Assistant Professor, Harvard Medical School Center for Addiction Medicine Massachusetts General Hospital 101 Merrimac St. Boston, MA 02114 Tel.: 617-643-7293 Fax: 617-643-1998 On Dec 14, 2017, at 1:11 PM, Glasser, Matthew <[email protected]<mailto:[email protected]>> wrote: That would be reasonable. I would probably use the myelin maps without _BC if you are looking for differences in myelin content across groups. Peace, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of "Gilman, Jodi" <[email protected]<mailto:[email protected]>> Date: Thursday, December 14, 2017 at 10:21 AM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] group comparison in myelin maps I’m trying to compare 2 groups to see if there are differences in myelination. Here are the steps that seem logical to me, would be great to see if I’m going about this correctly: 1. Create a merged file of the MSMAll .dscalar maps for each group separately (using wb_shortcuts -cifti-concatenate)? 2. Run a permutation test to compare the groups Does that sound right? Thanks, Jodi Jodi Gilman, Ph.D. Assistant Professor, Harvard Medical School Center for Addiction Medicine Massachusetts General Hospital 101 Merrimac St. Boston, MA 02114 Tel.: 617-643-7293 Fax: 617-643-1998 The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
