Did you try the --CIFTI flag?

Matt.

From: 
<[email protected]<mailto:[email protected]>>
 on behalf of Sarah Ann Levy 
<[email protected]<mailto:[email protected]>>
Date: Tuesday, January 9, 2018 at 2:31 PM
To: "[email protected]<mailto:[email protected]>" 
<[email protected]<mailto:[email protected]>>
Subject: [HCP-Users] Trouble with CIFTI files using FSL 5.0.10 MELODIC

Hello,

I would like to run a group analysis on the HCP 1200 resting state data using 
MELODIC. I am running FSL 5.0.10. I have tried inputting this file for MELODIC 
4D data:  rfMRI_REST1_LR_Atlas_MSMAll_hp2000_clean.dtseries.nii but I receive 
an error and it does not accept the file.

I would like to directly run MELODIC on the CIFTI files rather than converting 
to NIFTI, back to CIFTI, etc.

Thank you,
Sarah

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