Perhaps you read it in as a volume file .nii rather than a CIFTI file .dtseries.nii or .dconn.nii.
Peace, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Joey Contreras <[email protected]<mailto:[email protected]>> Date: Thursday, February 8, 2018 at 6:48 PM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] How to view cifti correlation matrices/ trouble loading fifth-merge generated files Hello I was hoping someone would be able to lead me to a reference on how I can view the connectivity matrices generated from using wb_command -cifti-correlation? Before that I used the following commands on my HCP preprocessed AP, PA collected rsfMRI data •wb_command -cifti-reduce <input> MEAN mean.dtseries.nii •wb_command -cifti-reduce <input> STDEV stdev.dtseries.nii •wb_command -cifti-math '(x - mean) / stdev' <output> -fixnan 0 -var x <input> -var mean mean.dtseries.nii -select 1 1 -repeat -var stdev stdev.dtseries.nii -select 1 1 –repeat •wb_command -cifti-merge out.dtseries.nii -cifti first.dtseries.nii -cifti second.dtseries.nii -cifti third.dtseries.nii -cifti fourth.dtseries.nii Additionally I used the -cifti-merge command to generate a concatenated cifti file from both AP and PA directions however when I tried to then view this in connectome workbench I am told that this is not a volume file. How do I use the merged file? Here is the exact command used: -bash-4.1$ wb_command -cifti-merge 1101209_APPA_dtseries.nii -cifti demean_AP.dtseries.nii -cifti demean_PA.dtseries.nii Thank you in advance for your help! Joey Contreras _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
