I think it will be okay to just rerun the FreeSurferPipeline if you delete the
FreeSurfer folder
${StudyFolder}/${Subject}/T1w/${Subject}
Peace,
Matt.
From:
<[email protected]<mailto:[email protected]>>
on behalf of Darko Komnenić <[email protected]<mailto:[email protected]>>
Date: Wednesday, February 28, 2018 at 8:16 AM
To: "[email protected]<mailto:[email protected]>"
<[email protected]<mailto:[email protected]>>
Subject: [HCP-Users] rerunning FreeSurferPipelineBatch script
Dear HCP experts,
if the PreFreeSurferPipelineBatch script finished successfully, and then the
FreeSurfer one finished with errors, but made some new output files before
stopping, is it OK to just simply rerun FreeSurferPipeline script on the same
participants? Or should I first delete all the new files that were added by
this script, and leave only the ones that were there after the PreFreeSurfer
script finished?
Thanks,
Darko
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