The dev_latest version worked. Thanks a lot, Olivia
____________________________________ Olivia Viessmann, PhD A.A. Martinos Center for Biomedical Imaging Harvard Medical School Massachusetts General Hospital Building 75, Third Ave Charlestown, MA 02129 On 12 Mar 2018, at 19:05, Timothy Coalson <tsc...@mst.edu<mailto:tsc...@mst.edu>> wrote: Yes, the newest pipelines used an option that isn't in the 1.2.3 release. Grab the "dev_latest" zip file that matches your OS from here: http://brainvis.wustl.edu/workbench/ Tim On Mon, Mar 12, 2018 at 5:57 PM, Viessmann, Olivia M. <oviessm...@mgh.harvard.edu<mailto:oviessm...@mgh.harvard.edu>> wrote: Hello, I am running the PostFreeSurferPipeLineBatch.sh script from the Pipelines/Examples/Scripts/ on the example subject 100307. I've successfully tun the PreFreeSurfer and FreeSurfer scripts, but ran into the following problem with the PostFreeSurfer script when it calls wb_command I get the following error While running: ${HOME}/HCPData/workbench/bin_rh_linux64/../exe_rh_linux64/wb_command -surface-distortion ${HOME}/HCPData/Pipelines_ExampleData/100307/MNINonLinear/Native/100307.L.sphere.native.surf.gii ${HOME}/HCPData/Pipelines_ExampleData/100307/MNINonLinear/Native/100307.L.sphere.reg.reg_LR.native.surf.gii ${HOME}/HCPData/Pipelines_ExampleData/100307/MNINonLinear/Native/100307.L.Strain_FS.native.shape.gii -local-affine-method ERROR: Unexpected parameter: -local-affine-method Is the script relying on a newer version of wb_command? I downloaded the binaries for workbench from here https://www.humanconnectome.org/software/get-connectome-workbench Thanks a lot in advance Olivia The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
