Hi, The entirety of the original FS output is available at ${subject}/T1w/${subject}, which you can obtain via the “Structural Extended” packages, or as part of “Connectome-in-a-Box” (no longer taking new orders, but perhaps you already have one) or available on S3.
Cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Associate Professor of Psychiatry Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu From: <hcp-users-boun...@humanconnectome.org> on behalf of Jacob Miller <jacob_mil...@berkeley.edu> Date: Wednesday, April 18, 2018 at 9:04 PM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] Native space surface curvature available? Hi all, I am seeking to perform an anatomical analysis on the HCP dataset which requires the surfaces and cortical folding (gyri/sulci curvature) for each individual subject, in native space. This information is available in a typical FreeSurfer recon-all analysis. However, in the HCP data (namely, in $subject/T1w/Native/) the surfaces do not appear to have curvature information. Was this information released in the data from the modified HCP FreeSurfer pipelines, and I'm missing where this may be stored? Or, are the gyru/sulci curvature for each subject not available? If so, is there a way to obtain these curvatures without running an entire recon-all pipeline on each native T1 scan? Please let me know if I may be mistaken! I've only just begun trying to use this great dataset. Best, Jacob -- Jacob Miller Graduate Student, D'Esposito Lab Helen Wills Neuroscience Institute (HWNI) University of California, Berkeley https://despolab.berkeley.edu/ _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users