I would delete ${StudyFolder}/${Subject}/T1w/${Subject}
Peace,
Matt.
From:
<[email protected]<mailto:[email protected]>>
on behalf of Darko Komnenić <[email protected]<mailto:[email protected]>>
Date: Monday, May 7, 2018 at 10:36 AM
To: "[email protected]<mailto:[email protected]>"
<[email protected]<mailto:[email protected]>>
Subject: [HCP-Users] A question about rerunning FS pipeline
Dear HCP experts,
I am comparing cortical myelin content between patients and controls. I
manually corrected some brainmasks and tried to rerun the FS pipeline, which
failed at the HiResPial step, because I forgot that some lines of the script
have been commented out.
Can I just rerun everything (after returning the lines that were commented out)
or should I first delete some files or folders? For example, should I delete
the ribbon folder from Subject_name/T1w/Subject_name/mri subfolder?
Basically, the FS pipeline ran fine until the HiResPial step.
Thanks in advance for the replies!
Best,
Darko
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