I've attempted to combine cortical and subcortical parcellations on a few occasions without any luck, I'm hoping someone here can help me out.
#make some subcortical labels wb_command -cifti-create-label subcortical.dlabel.nii -volume Atlas_ROIs.2.nii.gz Atlas_ROIs.2.nii.gz #combine with cortical wb_command -cifti-create-dense-from-template 91282_Greyordinates.dscalar.nii TEST.dlabel.nii -cifti glasser_cort.dlabel.nii -cifti subcortical.dlabel.nii ... seg fault #try -cifti-merge-dense wb_command -cifti-merge-dense COLUMN TEST.dlabel.nii -cifti glasser_cort.dlabel.nii -cifti subcortical.dlabel.nii #check wb_command -file-information TEST.dlabel.nii ... everything looks ok.. #try to use it, look at the output after running through task pipeline wb_command -file-information subject_TEST.pscalar.nii And parcellations are incorrectly merged, exactly like described here: https://www.mail-archive.com/[email protected]/msg03217.html I also apparently created a dlabel file another way, I don't remember how, but the parcellations were incorrectly merged as above. I extracted the labels to text, manually edited the key values in vi and reimported them.. it looked ok then (dlabel.nii), however the output (pscalar.nii) again was incorrectly merged as above. Can anyone tell me how to do this? Thank you, Aaron _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
