There may be some confusion between annotations and labels. Annotations are the text characters on the surface that identify the parcels (e.g.: “MST”). Labels refer to the data file overlayed on the surface that colors brainordinates (surface vertices) by associating a color with a name.
The annotations are contained in the scene and not in a separate data file. If you want to disable the display of particular annotations: * Display the features toolbox by clicking the toolbox icon on the far right side of the toolbar or View Menu -> Features Toolbox -> Attach to Right. * In the Features ToolBox, click the Annot tab * In the Main Window, click the tab for the surface that contains annotations that you want to hide. A box will briefly appear around the surface when the tab is clicked. * Return to the Features Toolbox. Find the name of annotation you want to hide and uncheck the box next to the name. In the features toolbox, there is a “Group” selection that allows one to control the display of annotations within a “Group”. Each annotation contains a separate display status for each Group. For this scene, you will see several annotations with the same name but each is displayed in only one group. The reason is that on each surface (left, right, left flat, and right flat) the annotation needs a unique surface coordinate location. To save your changes: * Display the Scene Dialog by selecting the Clapboard icon in the Toolbar or Window Menu -> Scenes. * Click the New button to create a new Scene File. * Click the Add button to create a new scene and enter a name. * Click the Save As button, enter the path and name for the scene file, click the File Dialog’s Save button to save the scene file. For more information about annotations, select Help Menu -> Workbench Help. In the Help Dialog, click on Annotations 1.3 (7th item from top in Table of Contents). John Harwell On May 24, 2018, at 2:30 AM, Amin Dadashi <[email protected]<mailto:[email protected]>> wrote: Thank you Tim. I could use your help to solve the second issue. However, In the first case, by turning the labels off their name do not disappear (the names on the list are even slightly different from the ones that are shown) . It seems to me that the ROI names are saved in a separate surface file and are shown as an overlay and it is not possible to remove them individually. There are so many files associated with this specific *.scene file and I could not figure out where to find the one that contains the ROIs name. I would appreciate if anyone could give me a hint. On Thu, May 24, 2018, 03:37 Timothy Coalson <[email protected]<mailto:[email protected]>> wrote: 1) Open the features toolbox (rightmost button near the top right of the window), select the "labels" tab, expand the list for the file in question, and uncheck the labels you don't want (you can use the checkbox on the file to start with them all turned off). 2) The command required is "wb_command -label-resample", use the 32k and 59k standard spheres (L.sphere... and R.sphere..., for the separate hemispheres) in the HCP Pipelines global/templates/standard_mesh_atlases folder. The ideal way is to use ADAP_BARY_AREA, using global/templates/standard_mesh_atlases/resample_fsaverage/fs_LR.?.midthickness.va_avg... in the -area-metrics option, but since this specific case is an upsampling, this may only have marginal improvements over using BARYCENTRIC (which doesn't need vertex area data). Tim On Wed, May 23, 2018 at 3:45 AM, Amin Dadashi <[email protected]<mailto:[email protected]>> wrote: Hello, I am using "Glasser_et_al_2016_HCP_MMP1.0_6_AllAreasMap.scene" file of Multimodal Parcellation to localize the connectivity pattern of my study. I am using the 7T(1.6mm) HCP surface fMRI dataset. Now I have the following questions: 1. Is there any way to modify the shown parcellation labels of the "All Areas Map" scene file in wb_view? I want to delete the ones which are not relevant to my study. 2. How can I resample the "All Areas Map" labels and borders so I can overlay them on my 7T connectivity maps (59k mesh surface)? Thank you, Amin _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
