You were right, now the problem is gone but still cannot find my clean.dtseries
Here is the output, I could not find any error in .ica folder: hcp_fix RS_fMRI_1.nii.gz 2000 processing FMRI file RS_fMRI_1 with highpass 2000 running highpass running MELODIC running FIX FIX Feature extraction for Melodic output directory: RS_fMRI_1_hp2000.ica create edge masks run FAST registration of standard space masks extract features FIX Classifying components in Melodic directory: RS_fMRI_1_hp2000.ica using training file: /usr/local/fix1.065/training_files/HCP_hp2000.RData and threshold 10 FIX Applying cleanup using cleanup file: RS_fMRI_1_hp2000.ica/fix4melview_HCP_hp2000_thr10.txt and motion cleanup set to 1 Please advice. Thanks! -L > On May 26, 2018, at 2:52 PM, Glasser, Matthew <[email protected]> wrote: > > Perhaps you are running out of memory. > > Peace, > > Matt. > > From: <[email protected] > <mailto:[email protected]>> on behalf of Marta Moreno > <[email protected] <mailto:[email protected]>> > Date: Saturday, May 26, 2018 at 1:50 PM > To: HCP Users <[email protected] > <mailto:[email protected]>> > Subject: [HCP-Users] error running hcp_fix > > Dear experts, > > I am getting the following error. Please advice: > > hcp_fix RS_fMRI_1.nii.gz 2000 > processing FMRI file RS_fMRI_1 with highpass 2000 > running highpass > running MELODIC > running FIX > FIX Feature extraction for Melodic output directory: RS_fMRI_1_hp2000.ica > create edge masks > run FAST > registration of standard space masks > extract features > FIX Classifying components in Melodic directory: RS_fMRI_1_hp2000.ica using > training file: /usr/local/fix1.065/training_files/HCP_hp2000.RData and > threshold 10 > FIX Applying cleanup using cleanup file: > RS_fMRI_1_hp2000.ica/fix4melview_HCP_hp2000_thr10.txt and motion cleanup set > to 1 > sh: line 1: 10513 Killed: 9 > /Applications/MATLAB_R2017b.app/bin/matlab -nojvm -nodisplay -nodesktop > -nosplash -r "addpath('/usr/local/fix1.065'); > addpath('/usr/local/fsl/etc/matlab'); fix_3_clean('.fix',0,1,2000)" >> > .fix.log 2>&1 > > Thanks, > > -L > > _______________________________________________ > HCP-Users mailing list > [email protected] <mailto:[email protected]> > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > <http://lists.humanconnectome.org/mailman/listinfo/hcp-users> _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
