I think this was on the mailing list a while back so you might search for that solution. In any case, those logs don’t show the error so you might need to find the log from the MNI tool itself.
Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Boukhdhir Amal <[email protected]<mailto:[email protected]>> Reply-To: Boukhdhir Amal <[email protected]<mailto:[email protected]>> Date: Friday, July 13, 2018 at 10:24 AM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] Recon-all ERRORS in Freesurfer HCP Pipeline Dear all, I have runned the PreFreesurferHCP pipeline, I got an issue with the Freesurfer pipeline (as a second step in the structural pipeline). I attached the recon-all.log file and a screenshot of the error (error_freesurfer.png). The freesurfer version I am using is: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0-HCP These are more informations related to the distribution I am using: aboukhdhir@thuya:/mnt/home_sq/aboukhdhir$ cat /etc/os-release NAME="Ubuntu" VERSION="16.04.3 LTS (Xenial Xerus)" ID=ubuntu ID_LIKE=debian PRETTY_NAME="Ubuntu 16.04.3 LTS" VERSION_ID="16.04" HOME_URL="http://www.ubuntu.com/" SUPPORT_URL="http://help.ubuntu.com/" BUG_REPORT_URL="http://bugs.launchpad.net/ubuntu/" VERSION_CODENAME=xenial UBUNTU_CODENAME=xenial Am I using a wrong freesurfer version or this error may be related to something else ? Thanks ! Best, Amal _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
