Hi, Sorry, but not to my knowledge. We use ‘dcm2niix’ currently for DICOM to NIFTI conversion (‘dcm2niix’ generates nice .json files containing a bunch of relevant parameters of the scan). That particular step is pretty straightforward.
Then, as part of our “session building” process, we have code that does various checks and then “bundles” the ancillary files (e.g., SpinEchoFieldMaps) with their appropriate associated “main scan” into our “unproc” directory. That session-building “magic” is highly customized, and is not code that is currently applicable to generalized use. Cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Associate Professor of Psychiatry Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: [email protected] From: <[email protected]> on behalf of Shachar Gal <[email protected]> Date: Thursday, August 16, 2018 at 12:27 PM To: "[email protected]" <[email protected]> Subject: [HCP-Users] DICOM to NIFTI in HCP standard Hello, Upon starting to analyse our data, which was acquired with an HCP-like protocol, with the HCP pipelines, we were wondering if there is an available script or tool that converts DICOM to NIFTI in the HCP dir structure. Hope to hear from you. Shachar Gal, Tel Aviv University _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
