Unless you are developing cleaning methods you should be using the cleaned data for any downstream analyses. Also unless you are developing registration methods you should use the MSMAll data for best cross-subject alignment.
Matt. On 9/8/18, 8:58 AM, "Nina de Lacy" <dela...@u.washington.edu> wrote: >Hi Matt: > >Thanks for getting back to me. I probably should have specified we are >not using the cleaned data, but the unprocessed volumetric data and >surface mapped data for methods development. > >Sounds like maybe this data should have some volumes truncated? Its not >an issue - we have automated scripts to do this - but I would just like >to know whether its advisable and if so if you have any specific >recommendations as to how many volumes to remove. > >Thanks >Nina > > >On Fri, 7 Sep 2018, Glasser, Matthew wrote: > >> I think you should be okay if you use the sICA+FIX cleaned data. >> >> Matt. >> >> On 9/7/18, 11:22 PM, "hcp-users-boun...@humanconnectome.org on behalf of >> Nina de Lacy" <hcp-users-boun...@humanconnectome.org on behalf of >> dela...@u.washington.edu> wrote: >> >>> Hi there: >>> >>> Was still hoping to get input on this question. >>> >>> Thanks >>> Nina >>> >>> >>> >>> ---------- Forwarded message ---------- >>> Date: Thu, 30 Aug 2018 13:53:46 -0700 (PDT) >>> From: Nina de Lacy <dela...@u.washington.edu> >>> To: "HCP-Users@humanconnectome.org" <HCP-Users@humanconnectome.org> >>> Subject: [HCP-Users] Need to truncate dummy scans for 7T data? >>> >>> Hi there: >>> >>> For the 7T REST and MOVIE fMRI, is there a need to truncate scans from >>> the beginning of the scan to account for stabilization? >>> >>> If so, does the group have a particular recommendation for how many >>> volumes to remove? >>> >>> Thanks >>> Nina >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> HCP-Users@humanconnectome.org >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> HCP-Users@humanconnectome.org >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> ________________________________ >> The materials in this message are private and may contain Protected >>Healthcare Information or other information of a sensitive nature. If >>you are not the intended recipient, be advised that any unauthorized >>use, disclosure, copying or the taking of any action in reliance on the >>contents of this information is strictly prohibited. If you have >>received this email in error, please immediately notify the sender via >>telephone or return mail. >> >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > >This message and any attached files might contain confidential >information protected by federal and state law. The information is >intended only for the use of the individual(s) or entities originally >named as addressees. The improper disclosure of such information may be >subject to civil or criminal penalties. If this message reached you in >error, please contact the sender and destroy this message. Disclosing, >copying, forwarding, or distributing the information by unauthorized >individuals or entities is strictly prohibited by law. > ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
