Oops it turns I've been trying to run this on a tightly controlled login node that kills any user process once it eats up too much time/resources. It works when I run it on a compute node (same OS, same binaries, same input files). Nothing wrong with this command!
Sorry for the confusion! -Keith On Mon, Oct 1, 2018 at 11:27 PM Keith Jamison <kjami...@umn.edu> wrote: > See attached output file. > > -Keith > > On Mon, Oct 1, 2018 at 8:18 PM Timothy Coalson <tsc...@mst.edu> wrote: > >> I'd probably need to see the dlabel file being used. -cifti-parcellate >> doesn't seem to have changed much recently. Can you do -file-information >> on the dlabel file and paste the result? >> >> Tim >> >> >> On Mon, Oct 1, 2018 at 6:59 PM, Keith Jamison <kjami...@umn.edu> wrote: >> >>> Whenever I try to run wb_command -cifti-parcellate on linux, it hangs >>> for a few seconds and is then "killed": >>> >>> > wb_command -cifti-parcellate >>> rfMRI_REST1_3.0mm_PA_Atlas_hp2000_clean.dtseries.nii >>> MBtest.aparc+aseg.32k_fs_LR.dlabel.nii COLUMN >>> rfMRI_REST1_3.0mm_PA_Atlas_hp2000_clean_aparc+aseg.ptseries.nii >>> /home/kjamison/workbench_v1.3.2/bin_rh_linux64/wb_command: line 20: >>> 22313 Killed "$directory"/../exe_rh_linux64/wb_command "$@" >>> >>> workbench 1.3.2 >>> RHEL 6.10 >>> AMD64 >>> >>> This same command works in macOS (10.13.3) using the same input files. >>> >>> Any idea what's going on? >>> >>> -Keith >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> HCP-Users@humanconnectome.org >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>> >> >> _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
