Hi We get these seemingly random errors when implementing the hcp_fix_multi_run code on the task data with some subjects. We need help to figure it out.
Below is the output for two of the subjects. It the same error in all cases but with different column numbers. Thanks, Shankar --------- Wed Oct 10 13:40:11 EDT 2018 - hcp_fix_multi_run - INFORM - melodic_cmd: /usr/local/fsl-5.0/bin/melodic -i day2_hp2000_vnf -o day2_hp2000.ica/filtered_func_data.ica --nobet --report --Oall --tr=0.720000 --vn --dim=160 --verbose --debug -m /group/northoff/share/hcp_task_prep_fix/104416/MNINonLinear/Results/day2/day2_brain_mask Melodic Version 3.14 Melodic results will be in day2_hp2000.ica/filtered_func_data.ica START: setup START: setup_misc Mask provided : /group/northoff/share/hcp_task_prep_fix/104416/MNINonLinear/Results/day2/day2_brain_mask END: setup_misc after setup_misc START: setup_classic START: process_file before reading file day2_hp2000_vnfReading data file day2_hp2000_vnf ... done after reading file day2_hp2000_vnf before est smoothness Estimating data smoothness ... done after smoothness before reshape after reshape Removing mean image ... before remmean after remmean done END: process_file after process_file Excluding voxels with constant value ... done day2_hp2000.ica/filtered_func_data.ica/alldat An exception has been thrown Logic error:- detected by Newmat: index error: requested index = 0 MatrixType = Rect # Rows = 1; # Cols = 1994 Wed Oct 10 14:41:57 EDT 2018 - hcp_fix_multi_run - INFORM - melodic has been run: return_code = 0 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Wed Oct 10 14:07:43 EDT 2018 - hcp_fix_multi_run - INFORM - melodic_cmd: /usr/local/fsl-5.0/bin/melodic -i day1_hp2000_vnf -o day1_hp2000.ica/filtered_func_data.ica --nobet --report --Oall --tr=0.720000 --vn --dim=139 --verbose --debug -m /group/northoff/share/hcp_task_prep_fix/130114/MNINonLinear/Results/day1/day1_brain_mask Melodic Version 3.14 Melodic results will be in day1_hp2000.ica/filtered_func_data.ica START: setup START: setup_misc Mask provided : /group/northoff/share/hcp_task_prep_fix/130114/MNINonLinear/Results/day1/day1_brain_mask END: setup_misc after setup_misc START: setup_classic START: process_file before reading file day1_hp2000_vnfReading data file day1_hp2000_vnf ... done after reading file day1_hp2000_vnf before est smoothness Estimating data smoothness ... done after smoothness before reshape after reshape Removing mean image ... before remmean after remmean done END: process_file after process_file Excluding voxels with constant value ... done day1_hp2000.ica/filtered_func_data.ica/alldat An exception has been thrown Logic error:- detected by Newmat: index error: requested index = 0 MatrixType = Rect # Rows = 1; # Cols = 1882 Wed Oct 10 14:57:27 EDT 2018 - hcp_fix_multi_run - INFORM - melodic has been run: return_code = 0 _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
