Oh okay, I see it now. Thank you very much! - Cathy
Am Mi., 10. Okt. 2018 um 21:49 Uhr schrieb Timothy Coalson <tsc...@mst.edu>: > The surfaces are fine, we generally recommend very_inflated for viewing > data. To expand on what Matt said, the data in the map you are displaying > in that image appears to have an unusual distribution, with most values > near the minimum value, and a few spots with higher values (or perhaps the > palette coloring in the file doesn't match that map well). Clicking the > wrench icon on the layer will show you a histogram of the values in that > map, and let you change the settings for how the values get colored. You > may also want to look at a volume view to see if anything shows up in the > subcortical structures or cerebellum. > > Tim > > > On Wed, Oct 10, 2018 at 2:20 PM, Glasser, Matthew <glass...@wustl.edu> > wrote: > >> Try changing the color windowing. >> >> Matt. >> >> From: Cathy Chen <c...@alumni.princeton.edu> >> Date: Wednesday, October 10, 2018 at 7:55 AM >> To: Matt Glasser <glass...@wustl.edu> >> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> >> Subject: Re: [HCP-Users] Visualizing Greyordinate Masks >> >> Hi Matt, >> >> I loaded the file as an overlay with the various .surf.gii files in the >> folder >> "100206_3T_Structural_preproc\100206\MNINonLinear\fsaverage_LR32k". When >> I step through the 15 images corresponding to the 15 parcellation >> dimensions, I see very sparse visualizations. For example, this is the >> visualization I got corresponding to one of the parcellation dimensions: >> [image: image.png] >> I'm not sure if I'm using the wrong surface files, or if I need to >> re-save the .dtseries.nii file (to have 1s and 0s rather than the >> regression coeffecients), or if there is something else I need to change or >> add. >> >> Best, >> Cathy >> >> Am Mi., 10. Okt. 2018 um 04:14 Uhr schrieb Glasser, Matthew < >> glass...@wustl.edu>: >> >>> Steve and I think you have the right file, but are not understanding >>> what is confusing about viewing that file in Connectome Workbench, assuming >>> you have loaded the appropriate surfaces and volumes. >>> >>> Matt. >>> >>> From: <hcp-users-boun...@humanconnectome.org> on behalf of Cathy Chen < >>> c...@alumni.princeton.edu> >>> Date: Tuesday, October 9, 2018 at 9:11 AM >>> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> >>> Subject: [HCP-Users] Visualizing Greyordinate Masks >>> >>> Dear HCP experts, >>> >>> I'm working with subject-specific parcellations (for instance, " >>> HCP_S1200_PTNmaps_d15_25_50_100\3T_HCP1200_MSMAll_d15_ts2_Z\100206.dtseries.nii" >>> ) and would like to visualize the greyordinates corresponding to each of >>> the 15 (or 25, 50, or 100) spatial maps. >>> >>> I've been using Connectome Workbench, but have not been able to figure >>> out a way to do this based on online tutorials -- is it possible to >>> visualize these maps with Connectome Workbench? Would I need to save new >>> versions of the data, so that the maps lie in a [num_grayordinates x >>> num_maps] matrix rather than a [num_maps x num_grayordinates] matrix? >>> >>> Best, >>> Cathy >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> HCP-Users@humanconnectome.org >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>> >>> >>> ------------------------------ >>> >>> The materials in this message are private and may contain Protected >>> Healthcare Information or other information of a sensitive nature. If you >>> are not the intended recipient, be advised that any unauthorized use, >>> disclosure, copying or the taking of any action in reliance on the contents >>> of this information is strictly prohibited. If you have received this email >>> in error, please immediately notify the sender via telephone or return mail. >>> >> >> ------------------------------ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
