Nope. hcp_fix ran without errors Moataz
-----Original Message----- From: Glasser, Matthew [mailto:glass...@wustl.edu] Sent: 23 December 2018 01:20 To: Moataz Assem <moataz.as...@mrc-cbu.cam.ac.uk>; D0O0D <aruls...@gmail.com>; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] Postfix That is output by the matlab code. Is there an earlier error message? Matt. On 12/22/18, 7:16 PM, "Moataz Assem" <moataz.as...@mrc-cbu.cam.ac.uk> wrote: >Hi Matt, > >Yes, after PrepareICAs.m starts, the following message is shown several >times: > >/imaging/ma07/TaskBattery/mri_data/S01/MNINonLinear/Results/rfMRI_r1_AP >/rf >MRI_r1_AP_hp2000.ica/ComponentList.txt: No such file or directory. > >Then after PrepareICAs.m completes, the PostFix code crashes at the >following step: > >/imaging/ma07/Software/workbench-rh_linux64-v1.3.0/workbench/bin_rh_lin >ux6 4/../exe_rh_linux64/wb_command -cifti-convert-to-scalar >/imaging/ma07/TaskBattery/mri_data/S01/MNINonLinear/Results/rfMRI_r1_AP >/rf >MRI_r1_AP_hp2000.ica/filtered_func_data.ica/melodic_oIC_vol.dtseries.ni >i >ROW >/imaging/ma07/TaskBattery/mri_data/S01/MNINonLinear/Results/rfMRI_r1_AP >/rf >MRI_r1_AP_hp2000.ica/filtered_func_data.ica/melodic_oIC_vol.dscalar.nii >-name-file >/imaging/ma07/TaskBattery/mri_data/S01/MNINonLinear/Results/rfMRI_r1_AP >/rf >MRI_r1_AP_hp2000.ica/ComponentList.txt > >ERROR: name list file doesn't exist > >Moataz > >-----Original Message----- >From: Glasser, Matthew [mailto:glass...@wustl.edu] >Sent: 22 December 2018 00:01 >To: Moataz Assem <moataz.as...@mrc-cbu.cam.ac.uk>; D0O0D ><aruls...@gmail.com>; hcp-users@humanconnectome.org >Subject: Re: [HCP-Users] Postfix > >Do you get an error message? > >Matt. > >On 12/21/18, 1:55 PM, "Moataz Assem" <moataz.as...@mrc-cbu.cam.ac.uk> >wrote: > >>Hi, >> >>I ran into the same problem while running the PostFix script. The ICA >>directory does not contain a ComponentList.txt file but it does >>contain Noise.txt and Signal.txt >> >>Is this a file that should have been created at some step during one >>of the hcp_fix steps? >> >>Thanks >> >>Moataz >> >>-----Original Message----- >>From: hcp-users-boun...@humanconnectome.org >>[mailto:hcp-users-boun...@humanconnectome.org] On Behalf Of Glasser, >>Matthew >>Sent: 17 April 2018 23:18 >>To: D0O0D <aruls...@gmail.com>; hcp-users@humanconnectome.org >>Subject: Re: [HCP-Users] Postfix >> >>Do you get an error message? >> >>Peace, >> >>Matt. >> >>On 4/17/18, 3:36 PM, "hcp-users-boun...@humanconnectome.org on behalf >>of D0O0D" <hcp-users-boun...@humanconnectome.org on behalf of >>aruls...@gmail.com> wrote: >> >>>Dear HCP users, >>> >>>I fix and postfix running fine on one computer. This is a bottleneck >>>though and would like to get it working on the rest of the grid. I¹m >>>using basically the same settings from the box where it works, but I >>>can¹t seem to get postfix to create these files: >>> >>>Noise.txt >>>Signal.txt >>>ComponentList.txt >>> >>>Any ideas? >>> >>>Thanks, >>>Aaron >>>_______________________________________________ >>>HCP-Users mailing list >>>HCP-Users@humanconnectome.org >>>http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >>_______________________________________________ >>HCP-Users mailing list >>HCP-Users@humanconnectome.org >>http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > >________________________________ >The materials in this message are private and may contain Protected >Healthcare Information or other information of a sensitive nature. If >you are not the intended recipient, be advised that any unauthorized >use, disclosure, copying or the taking of any action in reliance on the >contents of this information is strictly prohibited. If you have >received this email in error, please immediately notify the sender via >telephone or return mail. ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
