Hi Prof. Jan-Mathijs, Thank you for your fast reply, this is very useful, I did not notice this low-resolution source space anatomical file before. Therefore, I need to convert this *.gii to CIFTI format as input to -cifti-resample <cfti-template>? Or its corresponding MEG CIFTI data as input to -cifti-resample <cfti-template>? Vielen Dank Best, Rigel
________________________________ 发件人: Schoffelen, J.M. (Jan Mathijs) <jan.schoffe...@donders.ru.nl> 发送时间: 2019年1月15日 6:41 收件人: Rigel Wang; HCP-Users@humanconnectome.org 抄送: supp...@humanconnectome.org; Pedro Antonio Valdés-Sosa 主题: Re: [HCP-Users] About wb_command -cifti-resample Hi Rigel, I suggest to use the low resolution subject-specific source models, which are part of the release data and are expressed in native space. They exist in a 4k and 8k vertex-per-hemisphere version. See page 92 of the S900 release manual. Best wishes, Jan-Mathijs On 15 Jan 2019, at 15:33, Rigel Wang <rigel.w...@neuroinformatics-collaboratory.org<mailto:rigel.w...@neuroinformatics-collaboratory.org>> wrote: Hi HCP team, Thanks a lot for your dedication to science. I am using your HCP-S900 dataset and Connectome Workbench for research. Specifically, in order to compare the E/MEG inverse solution, we are expecting to get the low resolution resting state fMRI on native space surface. We are trying to use HCP-S900 dataset for a test. For example, we want to downsample the105923\MNINonLinear\Result\rfMRI_REST1_LR\rfMRI_REST1_LR_Atlas_hp2000_clean.dtseries.nii. First, I use the wb_coomand -surface-resample in matlab to downsample the anatomical data( system([wb_command, ' -surface-resample ',' ',file.highResSurface{hemi},' ',file.highResSphere{hemi},' ',file.lowResSphere{hemi},' ', res_method,' ',file.lowResSurface{hemi}]);)for getting a low resolution suface which expecting to be around 3k vertices for each hemisphere. PS: downsampling the surface and projecting back to native space is for calculating the E/MEG leadfied. Then I am trying to use the wb_coomand -cifti-resample for downsample the functional data( system([wb_command, ' -cifti-resample ',' ',file.highResCii,' ',res_src_direction,' ',cifti_templete,' ',res_template_direction,' ',res_surface_method,' ', res_volume_method,' ',file.lowResCii]);) . Question: 1. I don't know what should I put in the <cifti_templete> for wb_coomand -cifti-resample? 2. Can I use the same project matrix from \105923\MNINonLinear\fsaverage_LR32k\105923.R.{pial or white}.32k_fs_LR.surf.gii file, which is 4*4 matrix, for projecting low-resolution 3k_fs_LR back, the output of -surface-resample, to individual native space? Thank you! Best, Rigel _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Spam detection software, running on the system "mailman02.nrg.mir", has identified this incoming email as possible spam. The original message has been attached to this so you can view it (if it isn't spam) or label similar future email. If you have any questions, see @@CONTACT_ADDRESS@@ for details. Content preview: Hi Prof. Jan-Mathijs, Thank you for your fast reply, this is very useful, I did not notice this low-resolution source space anatomical file before. Therefore, I need to convert this *.gii to CIFTI format as input to -cifti-resample <cfti-template>? Or its corresponding MEG CIFTI data as input to -cifti-resample <cfti-template>? Vielen Dank Best, Rigel [...] Content analysis details: (5.7 points, 5.0 required) pts rule name description ---- ---------------------- -------------------------------------------------- 3.2 CHARSET_FARAWAY_HEADER A foreign language charset used in headers 0.0 HTML_MESSAGE BODY: HTML included in message 2.5 MIME_CHARSET_FARAWAY MIME character set indicates foreign language 0.0 T_DKIM_INVALID DKIM-Signature header exists but is not valid
Spam detection software, running on the system "mailman02.nrg.mir", has identified this incoming email as possible spam. The original message has been attached to this so you can view it (if it isn't spam) or label similar future email. If you have any questions, see @@CONTACT_ADDRESS@@ for details. Content preview: Hi Prof. Jan-Mathijs, Thank you for your fast reply, this is very useful, I did not notice this low-resolution source space anatomical file before. Therefore, I need to convert this *.gii to CIFTI format as input to -cifti-resample <cfti-template>? Or its corresponding MEG CIFTI data as input to -cifti-resample <cfti-template>? Vielen Dank Best, Rigel [...] Content analysis details: (5.7 points, 5.0 required) pts rule name description ---- ---------------------- -------------------------------------------------- 3.2 CHARSET_FARAWAY_HEADER A foreign language charset used in headers 0.0 HTML_MESSAGE BODY: HTML included in message 2.5 MIME_CHARSET_FARAWAY MIME character set indicates foreign language
