Thanks Tim and Matt for the quick reply. Most of the files are NxN connectivity matrices, where N could denote, for instance, ROIs from different parcellation schemes or resting-state functional networks.
Ok, so one option is to transform these matrices into cifti files and share them through BALSA. On the one hand, this is a nice solution for it solves the user term uses. On the other, it is a bit of a roundabout way to store these files in the context of my manuscript. The matrices are used to derive graph-theoretic measures about brain organization (rather than for visualization purposes), so researchers interested in that would need to convert the cifti files back to CSV. More generally, do you suggest any methods to share HCP-derived files in an arbitrary format? Thanks in advance for the help. Best, Caio Em sex, 8 de fev de 2019 às 06:19, Timothy Coalson <tsc...@mst.edu> escreveu: > If your data is organized as a value per parcel/network, you should be > able to turn it into parcellated cifti files, which can be displayed in > wb_view (and therefore in scenes) as a matrix and/or as colored regions on > the surfaces and in the volume. > > See wb_command -cifti-parcellate (to make a template parcellated cifti > file you can use to import data into), -cifti-label-import (to get your > network ROIs into the format -cifti-parcellate wants), and -cifti-convert > (and its -from-text option, to read csv or other text data and output > cifti). > > Tim > > > On Thu, Feb 7, 2019 at 7:05 AM Caio Seguin <caioseg...@gmail.com> wrote: > >> Dear experts, >> >> I have used diffusion and resting-state functional MRI data from the HCP >> to derive whole brain connectomes for individual participants. I used the >> connectomes to computed graph-theoretic measures that are part of a >> manuscript I am working on. >> >> My question concerns the sharing of these connectomes and graph-theoretic >> measures. My current understanding is that sharing this data is ok as long >> as I make sure users abide to the HCP data usage terms. What are your >> suggestions on how to do this? >> >> I've seen BALSA proposed to this end, since it provides a built-in >> mechanism of user terms, but my files are CSV or .mat files rather than WB >> scenes. >> >> Thanks in advance for your help. >> >> Best regards, >> Caio Seguin >> >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
