some further information that might be useful - the output file rfMRI_REST_AP_temp_atlas.dtseries.nii, has already been created. its in the target folder. but the command won't stop "running"
On Sun, 31 Mar 2019 at 16:13, Shachar Gal <[email protected]> wrote: > Dear experts, > > while running the fMRISurface pipeline (using the latest pipeline release) > I encountered an issue where the subcortical-processing script takes a > really long while (now running for more than 6 hours). > this is the command on which it is stuck > > ${CARET7DIR}/wb_command -cifti-resample > ${ResultsFolder}/${NameOffMRI}_temp_subject_smooth.dtseries.nii COLUMN > ${ResultsFolder}/${NameOffMRI}_temp_template.dlabel.nii COLUMN > ADAP_BARY_AREA CUBIC ${ResultsFolder}/${NameOffMRI}_temp_atlas.dtseries.nii > -volume-predilate 10 > rm -f ${ResultsFolder}/${NameOffMRI}_temp_subject_smooth.dtseries.nii > > the wb_command version is 1.3.2 > there is no error being raise or anything. its still running, but its > ages... > the thing is, when running the older version of the pipeline (but the same > workbench version), there was no problem. > any ideas? > > ill report later on if it completes the command eventually.... > > thanks, > Shachar > > > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
