Hi,

What is the recommended version of the MSM binaries to use? The rep directory 
(https://github.com/ecr05/MSM_HOCR/releases) has v1.0.0 and v3.0.0 and I was 
previously using v2 from here: https://www.doc.ic.ac.uk/~ecr05/MSM_HOCR_v2/
Also what is the difference between these binaries and the ones downloaded with 
fsl? In otherwords, can I just point the MSMBINDIR in the SetUpHCPPipeline.sh 
to  ~/fsl/bin/ since it contains all the msm related functions?

Also I would appreciate a clarification on the list of compiled files to make 
sure exist in the directory pointed to for the MSMBINDIR variable.

Thanks

Moataz

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