What OS are you on? Matt.
From: "Jayasekera, Dinal" <dinal.jayasek...@wustl.edu<mailto:dinal.jayasek...@wustl.edu>> Date: Friday, April 5, 2019 at 5:18 PM To: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] nu_correct: crashed while running nu_evaluate Interestingly I had set the path to Freesurfer v6, but the script was calling on Freesurfer 5.3.0-HCP. After deleting the Freesurfer 5.3.0-HCP folder, the attached log file showed that the script was using the updated version of Freesurfer. However, as you can see, the log file still reported the same error about nu_correct crashing with the change above in place. Kind regards, Dinal Jayasekera<https://dinaljay.weebly.com/> PhD Candidate | InSITE Fellow<https://www.insitefellows.org/> Ammar Hawasli Lab<https://hawaslilab.weebly.com/> Department of Biomedical Engineering<https://bme.wustl.edu/Pages/default.aspx> | Washington University in St. Louis<https://wustl.edu/> ________________________________ From: Glasser, Matthew Sent: Thursday, April 4, 2019 6:05:48 PM To: Jayasekera, Dinal; hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] nu_correct: crashed while running nu_evaluate In your log file it says you are using 5.3.0-HCP. Matt. From: "Jayasekera, Dinal" <dinal.jayasek...@wustl.edu<mailto:dinal.jayasek...@wustl.edu>> Date: Thursday, April 4, 2019 at 4:05 PM To: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] nu_correct: crashed while running nu_evaluate Yes I am Kind regards, Dinal Jayasekera<https://dinaljay.weebly.com/> PhD Candidate | InSITE Fellow<https://www.insitefellows.org/> Ammar Hawasli Lab<https://hawaslilab.weebly.com/> Department of Biomedical Engineering<https://bme.wustl.edu/Pages/default.aspx> | Washington University in St. Louis<https://wustl.edu/> ________________________________ From: Glasser, Matthew Sent: Thursday, April 4, 2019 3:01:18 PM To: Jayasekera, Dinal; hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] nu_correct: crashed while running nu_evaluate Are you using FreeSurfer 6.0? Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of "Jayasekera, Dinal" <dinal.jayasek...@wustl.edu<mailto:dinal.jayasek...@wustl.edu>> Date: Thursday, April 4, 2019 at 11:25 AM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] nu_correct: crashed while running nu_evaluate Dear all, I have been running the FreeSurferPipelineBatch script (v4 of the HCP pipeline) and I'm getting an error saying that nu_correct: crashed while running nu_evaluate. I didn't encounter this same issue with the previous version of the pipeline script. I've attached the recon-all.log and orig_nu.log files. Has anyone encountered a similar issue? Kind regards, Dinal Jayasekera<https://dinaljay.weebly.com/> PhD Candidate | InSITE Fellow<https://www.insitefellows.org/> Ammar Hawasli Lab<https://hawaslilab.weebly.com/> Department of Biomedical Engineering<https://bme.wustl.edu/Pages/default.aspx> | Washington University in St. Louis<https://wustl.edu/> _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
