Additionally, this may already be fixed in the latest master (as of 3 weeks ago).
Tim On Thu, May 9, 2019 at 1:47 PM Timothy Coalson <tsc...@mst.edu> wrote: > The quick solution is to add that path to your default matlab path, with > the added benefit that you can then use ciftiopen and related in your own > code. Our setups always have a version of these functions in the default > matlab path, which is probably why we missed this. > > Tim > > > On Thu, May 9, 2019 at 1:08 PM Moataz Assem < > moataz.as...@mrc-cbu.cam.ac.uk> wrote: > >> Hi, >> >> >> >> When running MSMAllPipelineBatch, it ultimately calls the matlab function >> ComputeVN (in my case, running the matlab interpreted version) which then >> crashes because it doesn’t recognize the “ciftiopen” function. Obviously it >> can’t find the directory where the function is. I have already pointed >> $MATLAB_GIFTI_LIB in SetUpHCPPipeline.sh to >> …./HCPpipelines-4.0.0/global/matlab but I suspect this isn’t used properly. >> >> >> >> The MSMAllPipelineBatch doesn’t ask for any related directory inputs. >> When computeVN is called by SingleSubjectConcat.sh, there is no addpath >> pointing to the cifti functions. So am I missing something and the >> directory does get pointed to somewhere earlier? >> >> >> >> Thanks >> >> >> >> Moataz >> >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
