You cannot have multiple label keys with the same name in a single label map.
There are two very separate things that label volumes can do in cifti create commands: one is to set the name of a particular subset of voxels to group them into a "structure" (which has a limited set of available values, and are mostly used to prevent things like smoothing or gradient from crossing structure boundaries unless desired), and the other is to act as data inside the file (for dlabel files), for which there is no limit on what the names can be. I'm not clear on what you are actually trying to do. If your volume space already matches our 2mm template, and you want to use your labels with our 91k grayordinate data, you could just use the Pipelines/global/templates/91282_Greyordinates/91282_Greyordinates.dscalar.nii as the template and your volume file as the -volume-all argument. If you want to include voxels that our 91k grayordinates don't, then you need to create a new cifti space, which takes some more steps. Tim On Fri, Jun 14, 2019 at 12:34 PM Sanchez, Juan (NYSPI) < juan.sanc...@nyspi.columbia.edu> wrote: > Dear HCP community > > I am trying to create a labeled volume that will work with > -cifti-create-dense-from-template > > The volume data has over 100 ROI's and the cifti create function only > imports specified labels > > > CORTEX_LEFT CORTEX_RIGHT CEREBELLUM ACCUMBENS_LEFT ACCUMBENS_RIGHT > ALL_GREY_MATTER ALL_WHITE_MATTER AMYGDALA_LEFT AMYGDALA_RIGHT BRAIN_STEM > CAUDATE_LEFT CAUDATE_RIGHT CEREBELLAR_WHITE_MATTER_LEFT > CEREBELLAR_WHITE_MATTER_RIGHT CEREBELLUM_LEFT CEREBELLUM_RIGHT > CEREBRAL_WHITE_MATTER_LEFT CEREBRAL_WHITE_MATTER_RIGHT CORTEX > DIENCEPHALON_VENTRAL_LEFT DIENCEPHALON_VENTRAL_RIGHT HIPPOCAMPUS_LEFT > HIPPOCAMPUS_RIGHT INVALID OTHER OTHER_GREY_MATTER OTHER_WHITE_MATTER > PALLIDUM_LEFT PALLIDUM_RIGHT PUTAMEN_LEFT PUTAMEN_RIGHT THALAMUS_LEFT > THALAMUS_RIGHT > > > I need to import all of the labeled ROI's values from the nii into the > subortical cifti. I tried labeling all of the ROI's with OTHER and name > collision in the input names did not allow that to work. > > > Does anyone know how to solve this or a work around > > Thanks so much > > J > > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
