Good question.
I had a vision of a structure whereas, each chromosome in the human
genome is a group, and each chromsome group is divided into bases,
which are also groups; those base groups would be filed with datasets
from multiple experiments at single base resolution...
in fact, if possible, I would like to have ~3.5 billion groups!
perhaps a structure like this isn't the best way to approach what I
want, but...
-Paul
>>> this is my signature.
On Mar 27, 2010, at 12:33 PM, Quincey Koziol <[email protected]>
wrote:
Hi Paul,
On Mar 27, 2010, at 11:22 AM, Paul Zumbo wrote:
I am using version 1.8.3.
I can install the latest version 1.8.4 & see if that changes the
result....
That may help. BTW, why are you creating 247 million groups?
QUincey
this is my signature.
On Mar 27, 2010, at 11:28 AM, Quincey Koziol <[email protected]>
wrote:
Hi Paul,
On Mar 26, 2010, at 5:24 PM, Paul Zumbo wrote:
Hello,
I am new to HD5.
I am trying to create many many number of groups ; however, the
below piece of code hangs,
chr1_id = H5Gcreate(file_id, "/chr1", H5P_DEFAULT, H5P_DEFAULT,
H5P_DEFAULT);
for (i = 1; i <= 247249719; i++){
k = sprintf(pos, "%d", i);
group_id = H5Gcreate(chr1_id, pos, H5P_DEFAULT, H5P_DEFAULT,
H5P_DEFAULT);
status = H5Gclose(group_id);
}
whenever i attempt to create, say, 1000 groups, it works just
fine..
is there a maximum number of groups that an H5 structure supports?
am I doing some wrong?
Looks fine to me. What version of the HDF5 library are you using?
Quincey
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_______________________________________________
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