Michael, Did you run HDF5 tests when you built HDF5 library? Did they pass?
Elena On Mar 29, 2010, at 7:04 PM, [email protected] wrote: > > I was wondering if anyone has experience with the hdf5 package for the R > statistical software. Right now we can get the code to compile and while > it usually reads existing hdf5 files it doesn't write hdf5 files that can > be read by itself or other software. > > We have tried installing this on various Linux machines (both Red Hat and > Ubuntu) by using both the package managers and compiling the code from > scratch. We've compiled using both HDF5 1.8 and 1.6 and neither works. > > Specifically, this simple test in R produces the following error > > Step 1: create file (run from within R) > > library(hdf5) > data = 1:10 > hdf5save("test.h5","dat") > > Step 2: exit and then restart R > > hdf5load("test.h5") > > HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 thread > 47700932800864. Back trace follows. > #000: H5F.c line 2049 in H5Fopen(): unable to open file > major(04): File interface > minor(17): Unable to open file > #001: H5F.c line 1829 in H5F_open(): unable to read superblock > major(04): File interface > minor(24): Read failed > #002: H5Fsuper.c line 114 in H5F_read_superblock(): unable to find file > signature > major(04): File interface > minor(19): Not an HDF5 file > #003: H5F.c line 1281 in H5F_locate_signature(): unable to find a valid > file signature > major(05): Low-level I/O layer > minor(29): Unable to initialize object > Error in hdf5load("test.h5") : unable to open HDF file: test.h5 > > ________________________________________________________________________ > Michael Dietze [email protected] > Assistant Professor www.life.uiuc.edu/dietze > Department of Plant Biology (217) 265-8020 > University of Illinois 1405 IGB / 183 Morrill > > > > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
