Hi,
I make the test again today 2010 06 23, 10h paris
I use windows XP 32bits
My system is updated regularly and automatically.
Ifort 11.1 under VS 2008
CMake 2.8.1
As for the static libraries use :
Only NODEFAULTLIB:msvcrt.lib is necessary to link against
HDF5-1.8.5-win32/lib librairies.
ifort output is :
####################################################
......
zlib.lib(zutil.obj):warning : locally defined symbol __imp__malloc imported
zlib.lib(zutil.obj):warning : locally defined symbol __imp__free imported
LINK : test.exe non trouvé ou non généré par la dernière édition de
liens incrémentielle ; édition de liens complète en cours
LINK : warning LNK4068: /MACHINE non spécifié ; X86 pris par défaut
zlib.lib(zutil.obj) : warning LNK4217: symbole défini localement _malloc
importé dans la fonction _zcalloc
libszip.lib(sz_api.obj) : warning LNK4049: symbole défini localement
_malloc importé
libszip.lib(rice.obj) : warning LNK4217: symbole défini localement
_malloc importé dans la fonction _fix_last_scanline
zlib.lib(zutil.obj) : warning LNK4217: symbole défini localement _free
importé dans la fonction _zcfree
libszip.lib(sz_api.obj) : warning LNK4049: symbole défini localement
_free importé
libszip.lib(rice.obj) : warning LNK4217: symbole défini localement _free
importé dans la fonction _encode_scanline
.......
######################################################
Albeit ifort output is (without NODEFAULTLIB:MSVCDT.lib) :
############################################################
"C:\Program Files\CMake 2.8\bin\cmake.exe" -HC:\xxx\yyy\zzz\src
-BC:\xxx\yyy\zzz\build --check-build-system CMakeFiles\Makefile.cmake 0
"C:\Program Files\CMake 2.8\bin\cmake.exe" -E cmake_progress_start
C:\xxx\yyy\zzz\build\CMakeFiles
C:\xxx\yyy\zzz\build\CMakeFiles\progress.marks
C:/dev/programs/MinGW/bin/mingw32-make -f CMakeFiles\Makefile2 all
mingw32-make[1]: Entering directory `C:/dev/projects/test_ifort_hdf5/build'
C:/dev/programs/MinGW/bin/mingw32-make -f CMakeFiles\test.dir\build.make
CMakeFiles/test.dir/depend
mingw32-make[2]: Entering directory `C:/dev/projects/test_ifort_hdf5/build'
"C:\Program Files\CMake 2.8\bin\cmake.exe" -E cmake_depends "MinGW
Makefiles" C:\xxx\yyy\zzz\src C:\xxx\yyy\zzz\src C:\xxx\yyy\zzz\build
C:\xxx\yyy\zzz\build
C:\xxx\yyy\zzz\build\CMakeFiles\test.dir\DependInfo.cmake --color=
mingw32-make[2]: Leaving directory `C:/dev/projects/test_ifort_hdf5/build'
C:/dev/programs/MinGW/bin/mingw32-make -f CMakeFiles\test.dir\build.make
CMakeFiles/test.dir/requires
mingw32-make[2]: Entering directory `C:/dev/projects/test_ifort_hdf5/build'
mingw32-make[2]: Nothing to be done for `CMakeFiles/test.dir/requires'.
mingw32-make[2]: Leaving directory `C:/dev/projects/test_ifort_hdf5/build'
C:/dev/programs/MinGW/bin/mingw32-make -f CMakeFiles\test.dir\build.make
CMakeFiles/test.dir/build
mingw32-make[2]: Entering directory `C:/dev/projects/test_ifort_hdf5/build'
"C:\Program Files\CMake 2.8\bin\cmake.exe" -E cmake_progress_report
C:\xxx\yyy\zzz\build\CMakeFiles 1
[100%] Building Fortran object CMakeFiles/test.dir/test.f90.obj
C:\PROGRA~1\Intel\Compiler\11.1\060\bin\ia32\ifort.exe /fpp
/FoCMakeFiles\test.dir\test.f90.obj /W1 /nologo /fpp /libs:dll /threads
/O1 /D NDEBUG -IC:\aaa\bbb\HDF5-1.8.5-win32\mods -c
C:\xxx\yyy\zzz\src\test.f90
Linking Fortran executable test.exe
"C:\Program Files\CMake 2.8\bin\cmake.exe" -E cmake_link_script
CMakeFiles\test.dir\link.txt --verbose=1
"C:\Program Files\CMake 2.8\bin\cmake.exe" -E vs_link_exe
C:\PROGRA~1\Intel\Compiler\11.1\060\bin\ia32\ifort.exe
@CMakeFiles\test.dir\objects1.rsp /W1 /nologo /fpp /libs:dll /threads
/O1 /D NDEBUG /Fetest.exe -link /implib:libtest.dll.a /INCREMENTAL:YES
/subsystem:console C:\aaa\bbb\HDF5-1.8.5-win32\lib\hdf5.lib
C:\aaa\bbb\HDF5-1.8.5-win32\lib\hdf5_fortran.lib
C:\aaa\bbb\HDF5-1.8.5-win32\lib\hdf5_f90cstub.lib
C:\aaa\bbb\HDF5-1.8.5-win32\lib\zlib.lib
C:\aaa\bbb\HDF5-1.8.5-win32\lib\libszip.lib user32.lib
LINK : test.exe non trouvé ou non généré par la dernière édition de
liens incrémentielle ; édition de liens complète en cours
LINK : warning LNK4068: /MACHINE non spécifié ; X86 pris par défaut
libifcoremt.lib(for_reentrancy.obj) : error LNK2005: _for_set_reentrancy
déjà défini(e) dans libifcoremd.lib(libifcoremd.dll)
LIBCMT.lib(crt0dat.obj) : error LNK2005: __amsg_exit déjà défini(e) dans
MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(crt0dat.obj) : error LNK2005: __initterm_e déjà défini(e)
dans MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(crt0dat.obj) : error LNK2005: _exit déjà défini(e) dans
MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(crt0dat.obj) : error LNK2005: __exit déjà défini(e) dans
MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(crt0dat.obj) : error LNK2005: __cexit déjà défini(e) dans
MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(_ctype.obj) : error LNK2005: _isgraph déjà défini(e) dans
MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(invarg.obj) : error LNK2005: __invoke_watson déjà défini(e)
dans MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(tidtable.obj) : error LNK2005: __encode_pointer déjà
défini(e) dans MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(tidtable.obj) : error LNK2005: __decode_pointer déjà
défini(e) dans MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(winxfltr.obj) : error LNK2005: __XcptFilter déjà défini(e)
dans MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(crt0init.obj) : error LNK2005: ___xi_a déjà défini(e) dans
MSVCRT.lib(cinitexe.obj)
LIBCMT.lib(crt0init.obj) : error LNK2005: ___xi_z déjà défini(e) dans
MSVCRT.lib(cinitexe.obj)
LIBCMT.lib(crt0init.obj) : error LNK2005: ___xc_a déjà défini(e) dans
MSVCRT.lib(cinitexe.obj)
LIBCMT.lib(crt0init.obj) : error LNK2005: ___xc_z déjà défini(e) dans
MSVCRT.lib(cinitexe.obj)
LIBCMT.lib(hooks.obj) : error LNK2005: "void __cdecl terminate(void)"
(?terminate@@YAXXZ) déjà défini(e) dans MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(setlocal.obj) : error LNK2005: __configthreadlocale déjà
défini(e) dans MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(crt0.obj) : error LNK2005: _mainCRTStartup déjà défini(e)
dans MSVCRT.lib(crtexe.obj)
LIBCMT.lib(mlock.obj) : error LNK2005: __unlock déjà défini(e) dans
MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(mlock.obj) : error LNK2005: __lock déjà défini(e) dans
MSVCRT.lib(MSVCR90.dll)
LIBCMT.lib(errmode.obj) : error LNK2005: ___set_app_type déjà défini(e)
dans MSVCRT.lib(MSVCR90.dll)
LINK : warning LNK4098: conflit entre la bibliothèque par défaut
'MSVCRT' et les autres bibliothèques ; utilisez /NODEFAULTLIB:library
LINK : warning LNK4098: conflit entre la bibliothèque par défaut
'LIBCMT' et les autres bibliothèques ; utilisez /NODEFAULTLIB:library
test.exe : fatal error LNK1169: un ou plusieurs symboles définis à
différentes reprises ont été rencontrés
LINK Pass 1 failed. with 1169
mingw32-make[2]: Leaving directory `C:/dev/projects/test_ifort_hdf5/build'
mingw32-make[1]: Leaving directory `C:/dev/projects/test_ifort_hdf5/build'
#####################################################"""
With the dynamic library, the test wites :
HDF5-DIAG: Error detected in HDF5 (1.8.5) thread 0:
#000: ..\..\..\src\H5T.c line 2102 in H5Tget_size(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type
With static library, the test write :
Starting tests ...
Real's size : 4
End.
In addition, some hacks were necessary to link against the new
hdf5_f90cstub.lib.
Test Program CMakeLists.txt
###########################################################
cmake_minimum_required(VERSION 2.8 FATAL_ERROR)
enable_language(Fortran)
PROJECT(test)
SET(HDF5_MODULE_DIR /usr CACHE PATH "Path to HDF5 fortran modules library")
SET(SZIP_LIB /usr CACHE PATH "Path to SZIP library")
FIND_PACKAGE(ZLIB REQUIRED)
FIND_PACKAGE(HDF5 REQUIRED)
INCLUDE_DIRECTORIES(${HDF5_MODULE_DIR})
ADD_EXECUTABLE(test test.f90)
TARGET_LINK_LIBRARIES(test ${HDF5_hdf5_LIBRARY} ${HDF5_hdf5_fortran_LIBRARY}
${HDF5_LIB_DIR}/hdf5_f90cstub.lib
${ZLIB_LIBRARY}
${SZIP_LIB}/libszip.lib)
MESSAGE( STATUS "C library : ${HDF5_hdf5_LIBRARY}" )
MESSAGE( STATUS "C includes : ${HDF5_INCLUDE_DIRS}")
MESSAGE( STATUS "Fortran modules : ${HDF5_MODULE_DIR}" )
MESSAGE( STATUS "Fortran library : ${HDF5_hdf5_fortran_LIBRARY}" )
MESSAGE( STATUS "Fortran stub library : ${HDF5_LIB_DIR}/hdf5_f90cstub.lib" )
###########################################################
Best regards,
Cyril.
Le 24/06/2010 01:10, Elena Pourmal a écrit :
Hi Cyril,
Do you mean binaries from http://www.hdfgroup.org/HDF5/release/obtain5.html ?
If yes, could you please send the errors you got and did you use Vista or XP?
Thank you!
Elena
On Jun 23, 2010, at 11:39 AM, Giraudon Cyril wrote:
Hello,
I've tested the program against the latest binary release (downloaded today)
When I link the program against dll/lib libraries contained in
HDF5-1.8.5-win32/dll, the test fails.
When I link the program agains libraries contained in
HDF5-1.8.5-win32/lib, I have to add the following options to the linker :
- NODEFAULTLIB:MSVCRT.lib
- NODEFAULTLIB:libifcoremt.lib
but the test passes.
Hope this helps.
Best regards,
Cyril.
Le 21/06/2010 16:12, Giraudon Cyril a écrit :
Elena,
Yes yes with a link toward ifort 11.1 binaries I will do the test.
Regards,
Cyril.
Le 21/06/2010 16:00, Elena Pourmal a écrit :
Cyril,
We have binaries packed with CPack (as part of our CMake effort). Do you think
you can test it for us?
If so, we will send you a link to the binaries, and if they work, we will post
binaries on the Web site.
Thank you!
Elena
On Jun 21, 2010, at 7:26 AM, Giraudon Cyril wrote:
Hello,
I tries the little test program with the latest release of HDF5 (1.8.5)
and the same H5Tget_size function fails.
The binary package is compiled with ifort 10 and I compile the program
with ifort 11.1.06.
Are binaries, created with ifort 10, 100% compatible with ifort 11 ?
I can't compile HDF5 under windows since i have not Visual Studio 2008,
only the Express Edition with which the CMake 2.8.1 FortranCInterface
seems broken.
Is there any windows binaries compiled with ifort 11.1 that I could try ?
Thank a lot,
Regards,
Cyril.
Le 26/05/2010 18:52, Elena Pourmal a écrit :
Cyril,
Your program looks fine. We will need to look into the issue. To my knowledge
all tests passed with Intel 10 compiler (and function has been tested :-). I
will file a bug report.
Elena
On May 26, 2010, at 10:57 AM, Giraudon Cyril wrote:
Hello,
I have a problem with h5tget_size under windows.
The compiler is ifort 11.1 and I use a the latest precompiled version of
HDF5 :
hdf5-1.8.4-patch1-win32-vs2008-iv101-enc
The following little program works under linux (ubuntu 32bit& centos5.4
64bit) but does'nt under windowsXP :
"""
program test
use hdf5
integer :: hdferr
integer(hid_t) :: real_type_id
integer(size_t) :: type_size
print *, "Test starting ..."
call h5open_f(hdferr)
call h5tget_size_f(H5T_NATIVE_REAL, type_size, hdferr)
if (hdferr<0) then
print *, "Get size failed"
endif
print *, "Real's size : ", type_size
print *, "End."
call h5close_f(hdferr)
end program test
"""
Under windows, the program stops with :
"""
Test starting ...
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
#000: ../../../src/H5T.c line 2071 in H5Tget_size(): not a datatype
major: Invalid arguments to routine
minor: Inapproriate type
Get size failed.
"""
Do I something wrong ?
Thanks a lot,
Cyril.
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_______________________________________________
Hdf-forum is for HDF software users discussion.
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_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
