Vaibhav,
Hmm... I don't see the error in "make" output for 1.6.10, looks like it
finished building Fortran tests
........
mpif90 -I. -I. -I../src -c tH5E.f90 -o tH5E.o
echo timestamp > tH5E.lo
mpif90 -I. -I. -o fortranlib_test fortranlib_test.o tH5F.o tH5D.o tH5R.o tH5S.o
tH5T.o tH5VL.o tH5Z.o tH5Sselect.o tH5P.o tH5A.o tH5I.o tH5G.o tH5E.o tf.o t.o
./.libs/libh5test_fortran.a ../../test/.libs/libh5test.a
../src/.libs/libhdf5_fortran.a ../../src/.libs/libhdf5.a -lz -lm
make[3]: Leaving directory
`/home/vthakore/My_Downloads/hdf5-1.6.10/fortran/test'
make[2]: Leaving directory `/home/vthakore/My_Downloads/hdf5-1.6.10/fortran'
make[1]: Leaving directory `/home/vthakore/My_Downloads/hdf5-1.6.10'
make output for 1.8.5-patch 1 stops when trying to build C tests with this error
virtual memory exhausted: Cannot allocate memory
make[1]: *** [tselect.o] Error 1
Elena
On Jan 6, 2011, at 1:43 PM, Vaibhav Thakore wrote:
> Hi Elena,
>
> Thank you for your prompt response. First answers to your questions:
>
> On which platforms do you build and which compilers do you use?
> I am using OpenSuse Linux 11.1, kernel 2.6.27.56-0.1. I am using gcc(version:
> 4.3.2) and gfortran(version: 4.3.2)
>
> Can you see *.mod files in the fortran/src directory?
> Yes I can see the *.mod files in the fortran/src directory.
>
> Any chance that they were left their from the previous build?
> Nope as this is the first time I am trying to use HDF5 or PHDF5.
>
> Action Items:
> I followed your instructions to do the build again.
> Step 1:
> - make distclean starting from the top directory
>
> Step2:
> - configuring with the simplified command
> ./configure --prefix=/opt/hdf5-1.6.10 --with-szlib=/opt/szip-2.1
> --with-zlib=/lib64 --enable-fortran --enable-parallel
>
> Outcome:
> - configuring succeeded as earlier.
> - make failed with similar errors as earlier.
>
> I am attaching the console outputs for ./configure and make in two separate
> text files respectively:
>
> - vtconfiglogfile-hdf5-1.6.10
> - vtmakelogfile-hdf5-1.6.10.
>
> As per your suggestion I also tried building hdf5-1.8.5-patch1 but again
> configure succeeded but make failed. The console outputs for ./configure and
> make (partial output as write to the output file could not complete) in two
> separate text files respectively:
> - vtconfiglogfile-hdf5-1.8.5-patch1
> - vtmakelogfile-hdf5-1.8.5-patch1.
>
> I had earlier avoided installing the latest release hdf5-1.8.5-patch1 because
> there had been some bugs/problems reported in release notes with regard to
> using certain number of processors with PHDF5.
>
> Looking forward to your response. Thanks once again.
>
> Regards.
> Vaibhav
>
> Vaibhav Thakore
> Graduate Research Assistant
> 416 NanoScience Technology Center
> 12424 Research Parkway
> Orlando, FL 32826
> Phone: 864 506 6563
>>>> Elena Pourmal <[email protected]> 01/06/11 9:54 AM >>>
> Hi Vaibhav,
>
> It looks to me as mpif90 cannot find HDF5 modules when it links Fortran
> tests. On which platforms do you build and which compilers do you use? Can
> you see *.mod files in the fortran/src directory? Any chance that they were
> left their from the previous build?
>
> Could you please try
>
> - make distclean starting from the top directory
> - configuring with the simplified command
>
> ./configure --prefix=/opt/hdf5-1.6.10 --with-szlib=/opt/szip-2.1
> --with-zlib=/lib64 --enable-fortran --enable-parallel
>
> make
> make check
>
> Please save outputs of the configure command and make commands; if build
> doesn't work, we will need to look at the output.
>
> I would also recommend to use 1.8.5-patch1 instead of 1.6.10. If your
> application uses 1.6 API, you can use --with-default-api-version=v16
> configure flag when you configure and build the 1.8.5-patch1 library, or use
> -DH5_USE_16_API flag when you compile your application (and build the library
> as discussed above).
>
> Thank you!
>
> Elena
>
> On Jan 5, 2011, at 4:26 PM, vthakore wrote:
>
>>
>> Hi,
>>
>> I have been trying to install hdf5 with the parallel option and ran
>> configure using the following options:
>>
>> ./configure --prefix=/opt/hdf5-1.6.10 --with-szlib=/opt/szip-2.1
>> --with-zlib=/lib64 --enable-fortran --enable-linux-lfs --enable-debug=all
>> --enable-parallel
>>
>> Also set environment variables using
>>
>> export CC=mpicc and export FC=mpif90
>>
>> After successful configuration, I ran make which failed due to errors.
>> Please see output below. I already had mpich2 installed on my system and I
>> have sucessfully used mpi calls several times in my Fortran programs.
>>
>> Can someone please point out as to what the issue might be and how can it be
>> remedied? Thanks a lot for your time and effort.
>>
>> Regards.
>>
>> Vaibhav.
>>
>
> <vtconfiglogfile-hdf5-1.6.10><vtmakelogfile-hdf5-1.6.10><vtconfiglogfile-hdf5-1.8.5-patch1><vtmakelogfile-hdf5-1.8.5-patch1>_______________________________________________
> Hdf-forum is for HDF software users discussion.
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