I'm trying to read in from an hdf5 generated with HDF5 Version: 1.8.4 on
ubuntu x86_64-pc-linux-gnu system in C++.
H5::H5File h5file = H5::H5File();
h5file.openFile(dbfile, H5F_ACC_RDWR );
H5::Group group = h5file.openGroup("/vessel_graph/vertex_properties");
H5::DataSet dataset_centre = group.openDataSet( "centre");
H5::DataSpace dataspace = dataset_centre.getSpace();
int rank = dataspace.getSimpleExtentNdims();
hsize_t dims_out[2];
int ndims = dataspace.getSimpleExtentDims( dims_out, NULL);
// Define the memory dataspace.
H5::DataSpace memspace( rank, dims_out );
float centres[(unsigned long)(dims_out[0])][(unsigned
long)(dims_out[1])];
dataset_centre.read(centres,H5T_NATIVE_FLOAT,memspace, dataspace);
dataset_centre.close();
group.close();
h5file.close();
The code is reading the centers correctly into the float centres however ad
the line "dataset_centre.read()" it's throwing this error:
HDF5-DIAG: Error detected in HDF5 (1.8.4) thread 139812794677152:
#000: ../../../src/H5T.c line 1707 in H5Tclose(): immutable datatype
major: Invalid arguments to routine
minor: Bad value
DataType::~DataType - H5Tclose failed
It seems to be a warning since the code continues to execute and read
correctly. But I don't understand where this error is coming from or how to
fix it. Any idea?
Thank you in advance,
Sahar
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