When building with cmake there are two expectations, one is that the everything will be built out of source (usually create a sub-folder called build) and that the source folders are clean (you did not run configure and/or build in source).
That has to do with the cmake part, I will need find some help for why you get the following errors if the above conditions are met. Allen > I sure don't understand this problem. If I use CMake (on OS X 10.6 with > CMake 2.8.4) I get all sorts of mysterious undefined externals. > > When I look through the source, these appear to be used as function points > when they've never been defined. E.G. > > ./src/H5Osdspace.c:#define H5O_SHARED_ENCODE H5O_sdspace_shared_encode > ./src/H5Osdspace.c: H5O_sdspace_shared_encode, /* encode message */ > > > What gives? > > Linking C shared library ../bin/libhdf5.dylib > Undefined symbols: > "_H5O_sdspace_shared_encode", referenced from: > _H5O_MSG_SDSPACE in H5Osdspace.c.o > "_H5O_attr_shared_size", referenced from: > _H5O_MSG_ATTR in H5Oattr.c.o > "_H5O_fill_shared_encode", referenced from: > _H5O_MSG_FILL in H5Ofill.c.o > "_H5O_pline_shared_encode", referenced from: > _H5O_MSG_PLINE in H5Opline.c.o > "_H5O_dtype_shared_copy_file", referenced from: > _H5O_MSG_DTYPE in H5Odtype.c.o > "_H5O_attr_shared_post_copy_file", referenced from: > _H5O_MSG_ATTR in H5Oattr.c.o > "_H5O_fill_new_shared_decode", referenced from: > _H5O_MSG_FILL_NEW in H5Ofill.c.o > "_H5O_fill_new_shared_debug", referenced from: > _H5O_MSG_FILL_NEW in H5Ofill.c.o > "_H5O_attr_shared_decode", referenced from: > _H5O_MSG_ATTR in H5Oattr.c.o > "_H5O_fill_new_shared_delete", referenced from: > _H5O_MSG_FILL_NEW in H5Ofill.c.o > "_H5O_attr_shared_delete", referenced from: > _H5O_MSG_ATTR in H5Oattr.c.o > "_H5O_sdspace_shared_decode", referenced from: > _H5O_MSG_SDSPACE in H5Osdspace.c.o > "_H5O_fill_shared_decode", referenced from: > _H5O_MSG_FILL in H5Ofill.c.o > "_H5O_pline_shared_decode", referenced from: > _H5O_MSG_PLINE in H5Opline.c.o > "_H5O_pline_shared_link", referenced from: > _H5O_MSG_PLINE in H5Opline.c.o > "_H5O_sdspace_shared_delete", referenced from: > _H5O_MSG_SDSPACE in H5Osdspace.c.o > "_H5O_fill_new_shared_link", referenced from: > _H5O_MSG_FILL_NEW in H5Ofill.c.o > "_H5O_fill_shared_delete", referenced from: > _H5O_MSG_FILL in H5Ofill.c.o > "_H5O_attr_shared_debug", referenced from: > _H5O_MSG_ATTR in H5Oattr.c.o > "_H5O_sdspace_shared_link", referenced from: > _H5O_MSG_SDSPACE in H5Osdspace.c.o > "_H5O_pline_shared_delete", referenced from: > _H5O_MSG_PLINE in H5Opline.c.o > "_H5O_pline_shared_size", referenced from: > _H5O_MSG_PLINE in H5Opline.c.o > "_H5O_pline_shared_debug", referenced from: > _H5O_MSG_PLINE in H5Opline.c.o > "_H5O_dtype_shared_link", referenced from: > _H5O_MSG_DTYPE in H5Odtype.c.o > "_H5O_fill_new_shared_size", referenced from: > _H5O_MSG_FILL_NEW in H5Ofill.c.o > "_H5O_sdspace_shared_size", referenced from: > _H5O_MSG_SDSPACE in H5Osdspace.c.o > "_H5O_attr_shared_copy_file", referenced from: > _H5O_MSG_ATTR in H5Oattr.c.o > "_H5O_dtype_shared_size", referenced from: > _H5O_MSG_DTYPE in H5Odtype.c.o > "_H5O_pline_shared_copy_file", referenced from: > _H5O_MSG_PLINE in H5Opline.c.o > "_H5O_dtype_shared_encode", referenced from: > _H5O_MSG_DTYPE in H5Odtype.c.o > "_H5O_fill_shared_debug", referenced from: > _H5O_MSG_FILL in H5Ofill.c.o > "_H5O_sdspace_shared_copy_file", referenced from: > _H5O_MSG_SDSPACE in H5Osdspace.c.o > "_H5O_sdspace_shared_debug", referenced from: > _H5O_MSG_SDSPACE in H5Osdspace.c.o > "_H5O_fill_shared_link", referenced from: > _H5O_MSG_FILL in H5Ofill.c.o > "_H5O_fill_new_shared_copy_file", referenced from: > _H5O_MSG_FILL_NEW in H5Ofill.c.o > "_H5O_dtype_shared_decode", referenced from: > _H5O_MSG_DTYPE in H5Odtype.c.o > "_H5O_fill_shared_size", referenced from: > _H5O_MSG_FILL in H5Ofill.c.o > "_H5O_fill_new_shared_encode", referenced from: > _H5O_MSG_FILL_NEW in H5Ofill.c.o > "_H5O_fill_shared_copy_file", referenced from: > _H5O_MSG_FILL in H5Ofill.c.o > "_H5O_attr_shared_encode", referenced from: > _H5O_MSG_ATTR in H5Oattr.c.o > "_H5O_dtype_shared_delete", referenced from: > _H5O_MSG_DTYPE in H5Odtype.c.o > "_H5O_dtype_shared_debug", referenced from: > _H5O_MSG_DTYPE in H5Odtype.c.o > "_H5O_attr_shared_link", referenced from: > _H5O_MSG_ATTR in H5Oattr.c.o > ld: symbol(s) not found > > > > > > ________________________________ > Notice: This UI Health Care e-mail (including attachments) is covered by the > Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is confidential > and may be legally privileged. If you are not the intended recipient, you > are hereby notified that any retention, dissemination, distribution, or > copying of this communication is strictly prohibited. Please reply to the > sender that you have received the message in error, then delete it. Thank > you. > ________________________________ > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org >
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