Hi John,
On May 24, 2011, at 1:31 PM, John Knutson wrote:
> Hi, Quincey,
> I don't have a simple monolithic application that can be used to reproduce
> the problem, however I can email you directly the related code snippets where
> I'm seeing the problem, if that will help.
Yes, that should help.
> On a related note, I also tried replacing the H5Adelete_by_name call with an
> H5Dopen2 call followed by an H5Adelete call. Same results.
:-(
Well, send us what you can and we can see what's going on.
Quincey
> Quincey Koziol wrote:
>> Hi John,
>>
>> On May 24, 2011, at 10:34 AM, John Knutson wrote:
>>
>>
>>> I tried using an H5Ovisit call to make a list of the attributes to delete,
>>> which is then separately deleted using H5Adelete_by_name outside of the
>>> H5Ovisit callback, and the results were the same, so the problem I'm seeing
>>> doesn't appear to be due to the deletion inside the callback. That said,
>>> the loc_id I'm using in the delete call is the one provided to the callback
>>> (managed using H5Iinc_ref of course). It doesn't seem like that should be
>>> a problem, but I figured it should be mentioned just in case.
>>>
>>> Anyway. Still stuck on this issue.
>>>
>>
>> Hmm, can you send some test code that show's the failure?
>>
>> Quincey
>>
>>
>>> John Knutson wrote:
>>>
>>>> I'm seeing errors in our software when trying to delete attributes from
>>>> HDF5 files just prior to replacing them with new values. I've "attached"
>>>> one of the error messages to the end of this email. I'm not entirely sure
>>>> what's going on, but I'm starting to think that the problem might be due
>>>> to the fact that I'm deleting the attributes inside of an H5Ovisit
>>>> callback function. My attempts to reproduce the problem without the
>>>> H5Ovisit call have failed so far. Any suggestions as to what I might be
>>>> doing wrong? I don't see anything in H5Ovisit that says not to use any
>>>> particular HDF5 API inside the callback.
>>>>
>>>>
>>>> HDF5-DIAG: Error detected in HDF5 (1.8.7-pre1) thread 1:
>>>> #000: H5A.c line 2161 in H5Adelete_by_name(): unable to delete attribute
>>>> major: Attribute
>>>> minor: Can't delete message
>>>> #001: H5Oattribute.c line 1605 in H5O_attr_remove(): error deleting
>>>> attribute
>>>> major: Attribute
>>>> minor: Can't delete message
>>>> #002: H5Omessage.c line 1313 in H5O_msg_iterate_real(): iterator function
>>>> failed
>>>> major: Object header
>>>> minor: Unable to list node
>>>> #003: H5Oattribute.c line 1530 in H5O_attr_remove_cb(): unable to convert
>>>> into null message
>>>> major: Object header
>>>> minor: Can't delete message
>>>> #004: H5Oalloc.c line 1219 in H5O_release_mesg(): unable to delete file
>>>> space for object header message
>>>> major: Object header
>>>> minor: Can't delete message
>>>> #005: H5Omessage.c line 2088 in H5O_delete_mesg(): unable to delete file
>>>> space for object header message
>>>> major: Object header
>>>> minor: Can't delete message
>>>> #006: H5Oshared.h line 243 in H5O_attr_shared_delete(): unable to
>>>> decrement ref count for native message
>>>> major: Object header
>>>> minor: Unable to decrement reference count
>>>> #007: H5Oattr.c line 548 in H5O_attr_delete(): unable to adjust datatype
>>>> link count
>>>> major: Attribute
>>>> minor: Bad object header link count
>>>> #008: H5Oshared.h line 237 in H5O_dtype_shared_delete(): unable to
>>>> decrement ref count for shared message
>>>> major: Object header
>>>> minor: Unable to decrement reference count
>>>> #009: H5Oshared.c line 527 in H5O_shared_delete(): unable to adjust shared
>>>> object link count
>>>> major: Object header
>>>> minor: Bad object header link count
>>>> #010: H5Oshared.c line 247 in H5O_shared_link_adj(): interfile hard links
>>>> are not allowed
>>>> major: Links
>>>> minor: Unable to initialize object
>>>>
>>>>
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>>>>
>>> _______________________________________________
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>>>
>>
>>
>> _______________________________________________
>> Hdf-forum is for HDF software users discussion.
>> [email protected]
>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>>
>
> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> [email protected]
> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
_______________________________________________
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