I recently attempted an upgrade to HDF5 1.8.7 (as well as the latest HDF5DotNet wrapper library). After a number of issues with PInvokeStackImbalance MDA's (which ended with me changing all wrapper calls back to their original CallingConvention::Cdecl... hmmm...) - I put an "H5.Close()" call in my application exit code and this appears to have at least bypassed the "Assertion failed!" call.
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