Hi Chris,
I noticed that you are using Linux 2.6.9. We built the HDF-Java 2.7
software using Linux 2.6.18 and the C layer is built with gcc 4.1.2.
A few years ago there was an issue where HDF-Java (2.5) built with gcc 4.*
failed on machines that had an old C library (gcc 3.4).
I'm wondering if this could be the same issue... ?
-Barbara
On Wed, 1 Jun 2011, Brown, Chris wrote:
Hello Allen,
Thanks for your response. I am unable to run hdfview.sh from the bin folder
either. I encounter a similar JVM dump when I attempt this:
[chrisbr@pdelogin08 bin]$ ./hdfview.sh
#
# An unexpected error has been detected by Java Runtime Environment:
#
# SIGFPE (0x8) at pc=0x000000313f807827, pid=18472, tid=1092860256
#
# Java VM: Java HotSpot(TM) 64-Bit Server VM (10.0-b19 mixed mode linux-amd64)
# Problematic frame:
# C [ld-linux-x86-64.so.2+0x7827]
#
# An error report file with more information is saved as:
# /home/chrisbr/temp2/hdf-java/bin/hs_err_pid18472.log
#
# If you would like to submit a bug report, please visit:
# http://java.sun.com/webapps/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
./hdfview.sh: line 92: 18472 Aborted $JAVAPATH/java
-Xmx1000m -Djava.library.path=$LD_LIBRARY_PATH ncsa.hdf.view.HDFView -root
$HDFVIEW_HOME $*
Thanks,
Chris
From: Allen D Byrne [mailto:[email protected]]
Sent: Wednesday, June 01, 2011 8:46 AM
To: [email protected]
Cc: Brown, Chris
Subject: Re: [Hdf-forum] hdf java linux64 binaries
Chris,
The first question I need to ask; Can you run the hdfview.sh script from the
bin folder?
Allen
Hi,
I am having a problem with the HDF Java linux 64 bit binaries. We've been using
HDF Java for quite some time now on Windows, but I'm unable to get it running
on our linux 64 systems using the 2.7 linux 64 binaries as downloaded from the
production site.
First of all, here is some information on the linux host and java version I am
using:
[chrisbr@pdelogin08 ~/temp]$ uname -a
Linux pdelogin08.amd.com 2.6.9-55.ELsmp #1 SMP Fri Apr 20 16:36:54 EDT 2007
x86_64 x86_64 x86_64 GNU/Linux
[chrisbr@pdelogin08 ~/temp]$ java -version
java version "1.6.0_04"
Java(TM) SE Runtime Environment (build 1.6.0_04-b12)
Java HotSpot(TM) 64-Bit Server VM (build 10.0-b19, mixed mode)
I have a very simple java test program that makes a call to H5.H5Fopen and
H5.H5fclose(), but when I run it I get a JVM dump:
[chrisbr@pdelogin08 ~/temp]$ ls
hdftest.jar hydra_sort.h5 jhdf5.jar jhdf5obj.jar jhdf.jar jhdfobj.jar
libjhdf5.so libjhdf.so
[chrisbr@pdelogin08 ~/temp]$ java -cp
"hdftest.jar:jhdf5.jar:jhdf5obj.jar:jhdf.jar:jhdfobj.jar"
-Djava.library.path="/home/chrisbr/temp" com.amd.hdf.test.TestHdf
#
# An unexpected error has been detected by Java Runtime Environment:
#
# SIGFPE (0x8) at pc=0x000000313f807827, pid=424, tid=1076017504
#
# Java VM: Java HotSpot(TM) 64-Bit Server VM (10.0-b19 mixed mode linux-amd64)
# Problematic frame:
# C [ld-linux-x86-64.so.2+0x7827]
#
# An error report file with more information is saved as:
# /home/chrisbr/temp/hs_err_pid424.log
#
# If you would like to submit a bug report, please visit:
# http://java.sun.com/webapps/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
Abort
I looked through the documentation, but didn't see any notes about specific
linux versions supported/unsupported. Did I maybe miss something? I was very
much hoping to get this running using the provided binaries as I'm not much of
a C expert and would like to avoid having to build from source myself.
Any help or tips would be greatly appreciated.
Regards,
Chris
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
--
Barbara Jones
[email protected]
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
