Dan, Turns out the hdf5 file was fine. I just didn't realize that the dataset created was too large to open as a single spreadsheet in hdfview and that's why I was seeing errors when I tried to view. View subsets of the data set works fine!
Thanks, Ryan On Thu, Aug 18, 2011 at 7:38 AM, Daniel Kahn <[email protected]> wrote: > ** > Greetings Ryan, > > Does h5dump also produce errors? > > I don't think a (bug-free) h5import should be able to produce a bad hdf5 > file, regardless of the config file. > > It may be helpful to tell the list what version of h5import and HDFView you > are using. > > --dan > > > Ryan Price wrote: > > Hello, > > I would like to convert a binary dump (of SIFT features) to a HDF5 > dataset. I believe I have the dimensions and everything correct in my > config file which I have provided below, but I could be wrong since the info > on the binary dump I'm working from is not particularly clear. > > When I run the h5import command with my config file, the outfile file is > created without error. > > When I open the outfile with hdfview, I see the dataset name but not really > much else and many errors are reported, which I have copied below. > > The errors seem to suggest I am not creating the data set correctly. Any > idea what I'm doing wrong? > > Thanks, > > Ryan > > config_file: > PATH grp1/sift-test > INPUT-CLASS UIN > INPUT-SIZE 8 > RANK 2 > DIMENSION-SIZES 128 5328755 > OUTPUT-CLASS UIN > OUTPUT-SIZE 8 > > errors when opening: > HDF5-DIAG: Error detected in HDF5 (1.8.4) thread 2102279024: > #000: ../../../src/H5Adeprec.c line 214 in H5Aopen_name(): can't open > attribute > major: Attribute > minor: Can't open object > #001: ../../../src/H5A.c line 865 in H5A_open_by_name(): unable to load > attribute info from object header > major: Attribute > minor: Unable to initialize object > #002: ../../../src/H5Oattribute.c line 533 in H5O_attr_open_by_name(): > can't locate attribute > major: Attribute > minor: Object not found > HDF5-DIAG: Error detected in HDF5 (1.8.4) thread 2102279024: > #000: ../../../src/H5Edeprec.c line 182 in H5Eget_minor(): not a error > message ID > major: Invalid arguments to routine > minor: Inappropriate type > HDF5-DIAG: Error detected in HDF5 (1.8.4) thread 2102279024: > #000: ../../../src/H5Adeprec.c line 214 in H5Aopen_name(): can't open > attribute > major: Attribute > minor: Can't open object > #001: ../../../src/H5A.c line 865 in H5A_open_by_name(): unable to load > attribute info from object header > major: Attribute > minor: Unable to initialize object > #002: ../../../src/H5Oattribute.c line 533 in H5O_attr_open_by_name(): > can't locate attribute > major: Attribute > minor: Object not found > HDF5-DIAG: Error detected in HDF5 (1.8.4) thread 2102279024: > #000: ../../../src/H5Edeprec.c line 182 in H5Eget_minor(): not a error > message ID > major: Invalid arguments to routine > minor: Inappropriate type > HDF5-DIAG: Error detected in HDF5 (1.8.4) thread 2102279024: > #000: ../../../src/H5Adeprec.c line 214 in H5Aopen_name(): can't open > attribute > major: Attribute > minor: Can't open object > #001: ../../../src/H5A.c line 865 in H5A_open_by_name(): unable to load > attribute info from object header > major: Attribute > minor: Unable to initialize object > #002: ../../../src/H5Oattribute.c line 533 in H5O_attr_open_by_name(): > can't locate attribute > major: Attribute > minor: Object not found > HDF5-DIAG: Error detected in HDF5 (1.8.4) thread 2102279024: > #000: ../../../src/H5Edeprec.c line 182 in H5Eget_minor(): not a error > message ID > major: Invalid arguments to routine > minor: Inappropriate type > > ------------------------------ > > _______________________________________________ > Hdf-forum is for HDF software users > [email protected]http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org > > > -- > Daniel Kahn > Science Systems and Applications Inc.301-867-2162 > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org > >
_______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
