Elena, I've reduced it to a single hdf5 file, which, when h5diff'ed with itself, produces output similar to below.
I will send the file to the address below. Thanks, Dave On Jul 24, 2012, at 11:25 AM, Elena Pourmal wrote: > Dave, > > Could you please send your file to [email protected]? We will take a look. > > On which system are you running the command? > > Thank you! > > Elena > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Elena Pourmal The HDF Group http://hdfgroup.org > 1800 So. Oak St., Suite 203, Champaign IL 61820 > 217.531.6112 > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > > > On Jul 24, 2012, at 12:13 PM, Dave Wade-Stein wrote: > >> I'm getting some output from h5diff which seems wrong. >> >> [dws@oxygen02 history]$ /usr/local/contrib/hdf5-1.8.8-par/bin/h5diff -v -p >> 1e-30 ptclTrackTagFromAbsorber1s_HistoryOld.h5 >> /scr1_oxygen/dws/jenkins/workspace/vorpalall-build/qarnodes/oxygen/vptests/vpresults-oxygen/history/ptclTrackTagFromAbsorber1s/ptclTrackTagFromAbsorber1s_HistoryOld.h5 >> /trajectory >> dataset: </trajectory> and </trajectory> >> size: [339x7x6] [339x7x6] >> position trajectory trajectory difference relative >> >> ------------------------------------------------------------------------ >> [ 0 1 0 ] 1.678294506e+243 0 1.678294506e+243 1 >> >> [ 0 1 1 ] 9.047791808e+164 0 9.047791808e+164 1 >> >> [ 0 1 2 ] 4.78541875e+175 0 4.78541875e+175 1 >> >> [ 0 1 3 ] 4.440349806e-38 0 4.440349806e-38 1 >> >> [ 0 1 4 ] 4.545801862e+97 0 4.545801862e+97 1 >> >> [ 0 1 5 ] 8.535925984e-307 0 8.535925984e-307 1 >> >> [ 0 2 0 ] 3.952525167e-322 0 3.952525167e-322 1 >> >> [ 0 2 1 ] 3.119382268e-319 0 3.119382268e-319 1 >> >> [ 0 2 2 ] 9.698666729e-317 0 9.698666729e-317 1 >> >> [ 0 2 3 ] 6.920039978e-310 0 6.920039978e-310 1 >> >> [ 0 2 4 ] 4.193339982e+228 0 4.193339982e+228 1 >> >> [ 0 2 5 ] 1.129002081e+277 0 1.129002081e+277 1 >> >> [ 0 3 0 ] 1.355073239e+248 0 1.355073239e+248 1 >> >> [ 0 3 2 ] 3.162020133e-322 0 3.162020133e-322 1 >> >> [ 0 3 3 ] 3.162020133e-322 0 3.162020133e-322 1 >> >> [ 0 3 5 ] 2.60988666e+180 0 2.60988666e+180 1 >> >> [ 0 4 0 ] 4.193339982e+228 0 4.193339982e+228 1 >> >> [ 0 4 1 ] 1.129002081e+277 0 1.129002081e+277 1 >> >> [ 0 4 2 ] 1.355073239e+248 0 1.355073239e+248 1 >> >> [ 0 4 5 ] 3.113058228e-319 0 3.113058228e-319 1 >> >> [ 0 5 0 ] 4.824065618e+228 0 4.824065618e+228 1 >> >> [ 0 5 1 ] 2.60988666e+180 0 2.60988666e+180 1 >> >> [ 0 5 2 ] 4.193339982e+228 0 4.193339982e+228 1 >> >> [ 0 5 3 ] 1.129002081e+277 0 1.129002081e+277 1 >> >> [ 0 5 4 ] 1.355073239e+248 0 1.355073239e+248 1 >> >> >> The diffs says that element (0,1,0) of the /trajectory dataset is >> 1.678294506e+243 (in bold above), but when I use h5dump to look at the >> dataset, I see 0s: >> >> ... >> DATASET "trajectory" { >> DATATYPE H5T_IEEE_F64LE >> DATASPACE SIMPLE { ( 339, 7, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED, >> H5S_UNLIMITED ) } >> DATA { >> (0,0,0): 1.09772e-05, 1.007e+12, 0, 0, 8, 0, >> (0,1,0): 0, 0, 0, 0, 0, 0, >> (0,2,0): 0, 0, 0, 0, 0, 0, >> (0,3,0): 0, 0, 0, 0, 0, 0, >> (0,4,0): 0, 0, 0, 0, 0, 0, >> (0,5,0): 0, 0, 0, 0, 0, 0, >> (0,6,0): 0, 0, 0, 0, 0, 0, >> (1,0,0): 1.10752e-05, 1.00993e+12, 0, 0, 8, 0, >> (1,1,0): 0, 0, 0, 0, 0, 0, >> (1,2,0): 0, 0, 0, 0, 0, 0, >> (1,3,0): 0, 0, 0, 0, 0, 0, >> (1,4,0): 0, 0, 0, 0, 0, 0, >> (1,5,0): 0, 0, 0, 0, 0, 0, >> (1,6,0): 0, 0, 0, 0, 0, 0, >> ... >> >> Any ideas what's going on here. The datatype in both files is >> H5T_IEEE_F64LE, so I know this is not a datatype comparison issue. >> >> Thanks, >> Dave \
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