Here's the info from our build/configure system for hdf5-1.8.10.I didnt do the 'make check' test. h5dump seg faults when trying to access file.
Scott #!/bin/bash # Clear cmake cache to ensure a clean configure. rm -rf CMakeFiles CMakeCache.txt '/Users/swsides/contrib/cmake/bin/cmake' \ -DCMAKE_INSTALL_PREFIX:PATH=/Users/swsides/contrib/hdf5-1.8.10-pre1-ser \ -DCMAKE_BUILD_TYPE:STRING=Release \ -DCMAKE_COLOR_MAKEFILE:BOOL=FALSE \ -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE \ -DCMAKE_C_COMPILER:FILEPATH='/usr/bin/gcc' \ -DCMAKE_CXX_COMPILER:FILEPATH='/usr/bin/g++' \ -DCMAKE_Fortran_COMPILER:FILEPATH='/usr/local/bin/gfortran' \ -DCMAKE_C_FLAGS:STRING='-pipe -fPIC' \ -DCMAKE_CXX_FLAGS:STRING='-pipe -fPIC' \ -DCMAKE_Fortran_FLAGS:STRING='-fPIC' \ -DHDF5_BUILD_TOOLS:BOOL=ON \ -DHDF5_BUILD_HL_LIB:BOOL=ON \ -DHDF5_BUILD_FORTRAN:BOOL=ON \ /Users/swsides/chompstall/builds/hdf5-1.8.10-pre1 this is the command I used for looking at the file thats attached. /Users/swsides/contrib/hdf5-1.8.10-pre1-ser/bin/h5dump diblock2s_History.h5 Thanks! Scott On 10/17/12 2:19 PM, Albert Cheng wrote:
Hi Scot, I would like to ask for some more information about h5dump seg fault in your Mountain Lion system. Did you also use gcc compilers to build hdf5 v1.8.10 pre-release in your mountain lion system? What configure option(s) did you use to build the library and tools? How does h5dump seg fault on you? Did it seg fault during "make check"? Or did it seg fault when you used it to access your own HDF5 data files? If the former (during make check), can you please send me whatever output it shows when it seg faulted. If the latter, any chance I may get a copy of your HDF5 files and the command you used? Thanks. -Albert On 10/17/12 11:28 AM, Scott Sides wrote:Dave, thanks for pointing that out. I had two windows open. Here are the results for my Mac Lion. polymer:~ swsides$ gfortran --version ;gcc --version ; uname -a GNU Fortran (GCC) 4.6.2 20111019 (prerelease) Copyright (C) 2011 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYINGi686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.1.00)Copyright (C) 2007 Free Software Foundation, Inc.This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.Darwin polymer.txcorp.com 11.4.2 Darwin Kernel Version 11.4.2: Thu Aug 23 16:25:48 PDT 2012; root:xnu-1699.32.7~1/RELEASE_X86_64 x86_64On 10/17/12 10:23 AM, Scott Sides wrote:[swsides@volt lists]$ gfortran --version ; gcc --version ; uname -a GNU Fortran (GCC) 4.4.4 20100726 (Red Hat 4.4.4-13) Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING gcc (GCC) 4.4.4 20100726 (Red Hat 4.4.4-13) Copyright (C) 2010 Free Software Foundation, Inc.This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.Linux volt.txcorp.com 2.6.32-71.29.1.el6.x86_64 #1 SMP Mon Jun 27 19:49:27 BST 2011 x86_64 x86_64 x86_64 GNU/LinuxOn 10/17/12 10:14 AM, Raymond Lu wrote:Scot, What compiler do you use? What version is it? Thanks. Ray On Oct 17, 2012, at 10:03 AM, Scott Sides wrote:I just tried the new 1.8.10 pre-release on Mac Lion and the binaries do not work. In particular the h5dump binary seg faults. Actualy, this problem seem to be persistent across lion, mountain lion and snow leopard since 1.8.7. We've had to revert to 1.8.7 on mac for some time. Is this problem known and is a fix being considered? Thanks, -- ********************************* Dr. Scott W. Sides [email protected] Tech-X Corporation 5621 Arapahoe Avenue, Suite A Boulder, CO 80303 office: (720) 974-1849 fax : (303) 448-7756 ********************************* _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org_______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org_______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
-- ********************************* Dr. Scott W. Sides [email protected] Tech-X Corporation 5621 Arapahoe Avenue, Suite A Boulder, CO 80303 office: (720) 974-1849 fax : (303) 448-7756 *********************************
diblock2s_History.h5
Description: Binary data
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