Hi Dave, Please try these:
1. ./configure ... 2. make # build all binary 3. make check # run testings The reasons of the failures you saw is because h5dump is arranged to be built AFTER h5import. When you did "make check" directly, the h5dump that was needed by the H5IMPORT test was not built yet, resulting in the no such file failure. It is our mistake to arrange h5dump built later than h5import. We will fix it for the next release. Thank you for reporting this failure. -Albert Cheng The HDF Group On 5/27/13 1:28 AM, Dave wrote:
Dear hdf5 users I'm trying to build HDF5 library in ubuntu 12.04 64bit LTS using gcc 4.7.3 $ ./configure --prefix=/opt/hdf5 --with-szlib=/opt/hdf5 --with-zlib=/opt/hdf5 \ $ make check ('szlib' and 'zlib' are already installed in /opt/hdf5) And I got 8 fails during running 'make check' as below. I've installed hdf5 tools from ubuntu software center and checked 'h5dump' worked fine but test didn't make it. It seems that there is no posts to refer for the problem in this forum. Please help this newbie. Thank you in advance. ============================== H5IMPORT tests started ============================== Testing ASCII I32 rank 3 - Output BE h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing ASCII I16 rank 3 - Output LE - CHUNKED - extended h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing ASCII I8 - rank 3 - Output I8 LE-Chunked+Extended+Compressed h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing ASCII UI16 - rank 2 - Output LE+Chunked+Compressed h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing ASCII UI32 - rank 3 - Output BE h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing ASCII F32 - rank 3 - Output LE h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing ASCII F64 - rank 3 - Output BE + CHUNKED+Extended+Compressed h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing BINARY F64 - rank 3 - Output LE+CHUNKED+Extended+Compressed h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing H5DUMP-BINARY F64 - rank 3 - Output LE+CHUNKED+Extended+Compreh5importtestutil.sh: line 186: ../h5dump: Is a directory One or more of the required fields (RANK, DIMENSION-SIZES) missing. Configuration parameters are invalid in dbinfp64.h5.dmp. Error in processing the configuration file: dbinfp64.h5.dmp. Program aborted. HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0: #000: H5L.c line 824 in H5Lexists(): unable to get link info major: Symbol table minor: Object not found #001: H5L.c line 2765 in H5L_exists(): path doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found major: Symbol table minor: Object not found *FAILED* Testing BINARY I8 - rank 3 - Output I16LE + Chunked+Extended+Compresseh5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing H5DUMP-BINARY I8 - rank 3 - Output I16LE + Chunked+Extended+Coh5importtestutil.sh: line 186: ../h5dump: Is a directory One or more of the required fields (RANK, DIMENSION-SIZES) missing. Configuration parameters are invalid in dbinin8.h5.dmp. Error in processing the configuration file: dbinin8.h5.dmp. Program aborted. HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0: #000: H5L.c line 824 in H5Lexists(): unable to get link info major: Symbol table minor: Object not found #001: H5L.c line 2765 in H5L_exists(): path doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found major: Symbol table minor: Object not found *FAILED* Testing BINARY I16 - rank 3 - Output order LE + CHUNKED + extended h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing H5DUMP-BINARY I16 - rank 3 - Output order LE + CHUNKED + extenh5importtestutil.sh: line 186: ../h5dump: Is a directory One or more of the required fields (RANK, DIMENSION-SIZES) missing. Configuration parameters are invalid in dbinin16.h5.dmp. Error in processing the configuration file: dbinin16.h5.dmp. Program aborted. HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0: #000: H5L.c line 824 in H5Lexists(): unable to get link info major: Symbol table minor: Object not found #001: H5L.c line 2765 in H5L_exists(): path doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found major: Symbol table minor: Object not found *FAILED* Testing BINARY I32 - rank 3 - Output BE + CHUNKED h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing H5DUMP-BINARY I32 - rank 3 - Output BE + CHUNKED h5importtestutil.sh: line 186: ../h5dump: Is a directory One or more of the required fields (RANK, DIMENSION-SIZES) missing. Configuration parameters are invalid in dbinin32.h5.dmp. Error in processing the configuration file: dbinin32.h5.dmp. Program aborted. HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0: #000: H5L.c line 824 in H5Lexists(): unable to get link info major: Symbol table minor: Object not found #001: H5L.c line 2765 in H5L_exists(): path doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found major: Symbol table minor: Object not found *FAILED* Testing BINARY UI16 - rank 3 - Output byte BE + CHUNKED h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing H5DUMP-BINARY UI16 - rank 3 - Output byte BE + CHUNKED h5importtestutil.sh: line 186: ../h5dump: Is a directory One or more of the required fields (RANK, DIMENSION-SIZES) missing. Configuration parameters are invalid in dbinuin16.h5.dmp. Error in processing the configuration file: dbinuin16.h5.dmp. Program aborted. HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0: #000: H5L.c line 824 in H5Lexists(): unable to get link info major: Symbol table minor: Object not found #001: H5L.c line 2765 in H5L_exists(): path doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found major: Symbol table minor: Object not found *FAILED* Testing BINARY UI32 - rank 3 - Output LE + CHUNKED h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing H5DUMP-BINARY UI32 - rank 3 - Output LE + CHUNKED h5importtestutil.sh: line 186: ../h5dump: Is a directory One or more of the required fields (RANK, DIMENSION-SIZES) missing. Configuration parameters are invalid in dbinuin32.h5.dmp. Error in processing the configuration file: dbinuin32.h5.dmp. Program aborted. HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0: #000: H5L.c line 824 in H5Lexists(): unable to get link info major: Symbol table minor: Object not found #001: H5L.c line 2765 in H5L_exists(): path doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found major: Symbol table minor: Object not found *FAILED* Testing STR h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing H5DUMP-STR h5importtestutil.sh: line 228: ../h5dump: Is a directory One or more of the required fields (RANK, DIMENSION-SIZES) missing. Configuration parameters are invalid in dtxtstr.h5.dmp. Error in processing the configuration file: dtxtstr.h5.dmp. Program aborted. HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0: #000: H5L.c line 824 in H5Lexists(): unable to get link info major: Symbol table minor: Object not found #001: H5L.c line 2765 in H5L_exists(): path doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found major: Symbol table minor: Object not found *FAILED* Testing BINARY I8 CR LF EOF h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED Testing H5DUMP-BINARY I8 CR LF EOF h5importtestutil.sh: line 186: ../h5dump: Is a directory One or more of the required fields (RANK, DIMENSION-SIZES) missing. Configuration parameters are invalid in dbinin8w.h5.dmp. Error in processing the configuration file: dbinin8w.h5.dmp. Program aborted. *FAILED* Testing ASCII F64 - rank 1 - INPUT-CLASS TEXTFPE h5importtestutil.sh: line 165: ../h5dump: Is a directory h5importtestutil.sh: line 168: ../h5dump: No such file or directory PASSED h5import tests failed with 8 errors. Command exited with non-zero status 1 0.28user 0.24system 0:01.44elapsed 36%CPU (0avgtext+0avgdata 17280maxresident)k 0inputs+792outputs (0major+376347minor)pagefaults 0swaps make[5]: *** [h5importtestutil.sh.chkexe_] Error 1 make[5]: Leaving directory `/home/dokeun/Downloads/hdf5-1.8.11/tools/h5import' make[4]: *** [build-check-s] Error 2 make[4]: Leaving directory `/home/dokeun/Downloads/hdf5-1.8.11/tools/h5import' make[3]: *** [test] Error 2 make[3]: Leaving directory `/home/dokeun/Downloads/hdf5-1.8.11/tools/h5import' make[2]: *** [check-am] Error 2 make[2]: Leaving directory `/home/dokeun/Downloads/hdf5-1.8.11/tools/h5import' make[1]: *** [check-recursive] Error 1 make[1]: Leaving directory `/home/dokeun/Downloads/hdf5-1.8.11/tools' make: *** [check-recursive] Error 1 -- View this message in context: http://hdf-forum.184993.n3.nabble.com/H5IMPORT-test-fail-tp4026217.html Sent from the hdf-forum mailing list archive at Nabble.com. _______________________________________________ Hdf-forum is for HDF software users discussion. 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