Joe, Thank you! Good catch!
Elena On Oct 31, 2013, at 5:05 PM, Joe Lee <[email protected]> wrote: > Elena, > > I know that the 3 steps will pass all tests as I wrote at the last line of > the previous message. > > By the way, ‘make distclean’ doesn’t seem to clean all test files. > > hdf-idap-[5:01pm]~/src>diff -r hdf5-1.8.12-pre2 hdf5-1.8.12-pre2.joe/ > Only in hdf5-1.8.12-pre2: Makefile > Only in hdf5-1.8.12-pre2.joe/test: dtypes10 > Only in hdf5-1.8.12-pre2.joe/test: testdir1 > Only in hdf5-1.8.12-pre2.joe/test: th5o_file > Only in hdf5-1.8.12-pre2.joe/test: tsohm.h5 > Only in hdf5-1.8.12-pre2.joe/test: tsohm_dst.h5 > Only in hdf5-1.8.12-pre2.joe/test: tsohm_src.h5 > Only in hdf5-1.8.12-pre2.joe/tools/h5dump: testfiles > Only in hdf5-1.8.12-pre2.joe/tools/h5jam/testfiles: h5jam-help.txt.err-sav > Only in hdf5-1.8.12-pre2.joe/tools/h5jam/testfiles: h5jam-help.txt.out-sav > Only in hdf5-1.8.12-pre2.joe/tools/h5jam/testfiles: > h5jam-ub-nohdf5.txt.err-sav > Only in hdf5-1.8.12-pre2.joe/tools/h5jam/testfiles: > h5jam-ub-nohdf5.txt.out-sav > Only in hdf5-1.8.12-pre2.joe/tools/h5jam/testfiles: h5unjam-help.txt.err-sav > Only in hdf5-1.8.12-pre2.joe/tools/h5jam/testfiles: h5unjam-help.txt.out-sav > Only in hdf5-1.8.12-pre2.joe/tools/h5ls: testfiles > Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: h5diff_attr1.h5 > Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00000.h5 > Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00001.h5 > Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00002.h5 > Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00003.h5 > Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00004.h5 > Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00005.h5 > Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00006.h5 > Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00007.h5 > Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00008.h5 > Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00009.h5 > Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00010.h5 > Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_nested_lp.ls > Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_nested_mult_lp.ls > Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_nested_mult_p.ls > Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_nested_p.ls > Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_several.ls > Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_several_l.ls > Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_several_p.ls > Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_several_v.ls > Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_single.ls > Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_single_l.ls > Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_single_p.ls > Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_single_v.ls > > From: Hdf-forum [mailto:[email protected]] On Behalf Of > Elena Pourmal > Sent: Thursday, October 31, 2013 4:20 PM > To: HDF Users Discussion List > Subject: Re: [Hdf-forum] HDF5 1.8.12 release candidate (pre2) is available > for testing > > Joe, > > This is a known dependency issue between the tools. > > Please run three steps: > > ./configure > make --> after this step all tools will be build necessary to run make check > make check > > Thank you! > > Elena > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Elena Pourmal The HDF Group http://hdfgroup.org > 1800 So. Oak St., Suite 203, Champaign IL 61820 > 217.531.6112 > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > > > > > On Oct 31, 2013, at 11:58 AM, H. Joe Lee <[email protected]> wrote: > > > $./configure && make check > > failed on the latest Mac OS X Mavericks (10.9) with the following errors: > > Running h5import out1.bin -c out3.h5import -o out1.h5 > testh5dump.sh: line 887: > /Users/hyoklee/src/hdf5-1.8.12-pre2/tools/h5dump/../h5import/h5import: > No such file or directory > > *FAILED* > > Running h5diff tbinary.h5 out1.h5 /integer /integer > h5diff: <out1.h5>: unable to open file > > *FAILED* > > Running h5import out1.bin -c tbin1.ddl -o out1D.h5 > testh5dump.sh: line 887: > /Users/hyoklee/src/hdf5-1.8.12-pre2/tools/h5dump/../h5import/h5import: > No such file or directory > > *FAILED* > > Running h5diff tbinary.h5 out1D.h5 /integer /integer > h5diff: <out1D.h5>: unable to open file > > *FAILED* > > Testing h5dump --enable-error-stack -b BE -d float -o out2.bin tbinary PASSED > > Testing h5dump --enable-error-stack -d integer -o out3.bin -b NATIVE t PASSED > > Running h5import out3.bin -c out3.h5import -o out3.h5 > testh5dump.sh: line 887: > /Users/hyoklee/src/hdf5-1.8.12-pre2/tools/h5dump/../h5import/h5import: > No such file or directory > > *FAILED* > > Running h5diff tbinary.h5 out3.h5 /integer /integer > h5diff: <out3.h5>: unable to open file > > *FAILED* > > Running h5import out3.bin -c tbin3.ddl -o out3D.h5 > testh5dump.sh: line 887: > /Users/hyoklee/src/hdf5-1.8.12-pre2/tools/h5dump/../h5import/h5import: > No such file or directory > > *FAILED* > > Running h5diff tbinary.h5 out3D.h5 /integer /integer > h5diff: <out3D.h5>: unable to open file > > *FAILED* > > Testing h5dump --enable-error-stack -d double -b FILE -o out4.bin tbin PASSED > > Testing h5dump --enable-error-stack tdatareg.h5 PASSED > > Testing h5dump --enable-error-stack -R tdatareg.h5 PASSED > > Testing h5dump --enable-error-stack tattrreg.h5 PASSED > > Testing h5dump --enable-error-stack -R tattrreg.h5 PASSED > > Testing h5dump --enable-error-stack -d /Dataset1 -s 0 -R -y -o tbinreg PASSED > > Testing h5dump --enable-error-stack --group=1 --sort_by=creation_order PASSED > > Testing h5dump --enable-error-stack --group=1 --sort_by=creation_order PASSED > > Testing h5dump --enable-error-stack -g 2 -q name -z ascending tordergr PASSED > > Testing h5dump --enable-error-stack -g 2 -q name -z descending torderg PASSED > > Testing h5dump --enable-error-stack -q creation_order tordergr.h5 PASSED > > Testing h5dump --enable-error-stack -H --sort_by=name --sort_order=asc PASSED > > Testing h5dump --enable-error-stack -H --sort_by=name --sort_order=des PASSED > > Testing h5dump --enable-error-stack -H --sort_by=creation_order --sort PASSED > > Testing h5dump --enable-error-stack -H --sort_by=creation_order --sort PASSED > > Testing h5dump --enable-error-stack --sort_by=name --sort_order=ascend PASSED > > Testing h5dump --enable-error-stack --sort_by=name --sort_order=descen PASSED > > Testing h5dump --enable-error-stack -m %.7f tfpformat.h5 PASSED > > Testing h5dump --enable-error-stack textlinksrc.h5 PASSED > > Testing h5dump --enable-error-stack textlinkfar.h5 PASSED > > Testing h5dump --enable-error-stack textlink.h5 PASSED > > Testing h5dump --enable-error-stack filter_fail.h5 PASSED > > Testing h5dump --enable-error-stack -y -o tall-6.txt -d /g1/g1.1/dset1 PASSED > > h5dump tests failed with 8 errors. > > 15.77 real 7.63 user 7.33 sys > > make[5]: *** [testh5dump.sh.chkexe_] Error 1 > > make[4]: *** [build-check-s] Error 2 > > make[3]: *** [test] Error 2 > > make[2]: *** [check-am] Error 2 > > make[1]: *** [check-recursive] Error 1 > > make: *** [check-recursive] Error 1 > > ----- > > All tests passed if I run > > $./configure && make && make check > > > -- > HDF: Software that Powers Science > > > On Wed, Oct 30, 2013 at 5:44 PM, Elena Pourmal <[email protected]> wrote: > > Michael, > > We did discuss the issue, and agreed that this should be addressed. I > created JIRA issue HDFFV-8557 and we will see what we can do for this > release; will not promise but will try. > > Elena > > > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Elena Pourmal The HDF Group http://hdfgroup.org > 1800 So. Oak St., Suite 203, Champaign IL 61820 > 217.531.6112 > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > > > > On Oct 28, 2013, at 10:08 AM, Michael Jackson <[email protected]> > wrote: > > I found a "bug" that I am hoping is a quick fix. > > If the following file: > config/cmake/H5pubconf.h.in > > at line 750 is the following: > > #define VERSION "@HDF5_PACKAGE_VERSION@" > > The issue that I am having is a few other libraries that I am using also > define the generic "VERSION" macro. I am wondering if we can change that to > > #define H5_VERSION "@HDF5_PACKAGE_VERSION@" > > There are 2 more > /* Number of bits in a file offset, on hosts where this is settable. */ > #cmakedefine _FILE_OFFSET_BITS > > /* Define for large files, on AIX-style hosts. */ > #cmakedefine _LARGE_FILES > > that are also a bit "generic" and should probably have the H5_ prefix > applied to them also. > > A quick compile on OS X seems to indicate it will compile. External > libraries that may be looking for that #define might have issues. > > Thoughts? > > Thanks > > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
_______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
