Hello,
I am trying to build HDF5 1.8.11 with PGI 13.2-0 and mvapich2 1.8 and am
getting a link error. I haven't been able to find any references to this issue
in my searching thus far.
The error:
FCLD fortranlib_test_F03
tH5F_F03.o: In function `test_get_file_image_':
/mnt/lfs2/projects/jetmgmt/Christopher.W.Harrop/bass/build/hdf5-mvapich2/1.8.11/pgi/13.2-0/mvapich2/1.8/fortran/test/./tH5F_F03.f90:92:
undefined reference to `h5fget_file_image_f_'
/mnt/lfs2/projects/jetmgmt/Christopher.W.Harrop/bass/build/hdf5-mvapich2/1.8.11/pgi/13.2-0/mvapich2/1.8/fortran/test/./tH5F_F03.f90:92:
undefined reference to `h5fget_file_image_f_'
/mnt/lfs2/projects/jetmgmt/Christopher.W.Harrop/bass/build/hdf5-mvapich2/1.8.11/pgi/13.2-0/mvapich2/1.8/fortran/test/./tH5F_F03.f90:92:
undefined reference to `h5fget_file_image_f_'
make[3]: *** [fortranlib_test_F03] Error 2
make[3]: Leaving directory
`/mnt/lfs2/projects/jetmgmt/Christopher.W.Harrop/bass/build/hdf5-mvapich2/1.8.11/pgi/13.2-0/mvapich2/1.8/fortran/test'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
`/mnt/lfs2/projects/jetmgmt/Christopher.W.Harrop/bass/build/hdf5-mvapich2/1.8.11/pgi/13.2-0/mvapich2/1.8/fortran'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/mnt/lfs2/projects/jetmgmt/Christopher.W.Harrop/bass/build/hdf5-mvapich2/1.8.11/pgi/13.2-0/mvapich2/1.8'
make: ***
[/mnt/lfs2/projects/jetmgmt/Christopher.W.Harrop/bass/opt/hdf5-mvapich2/1.8.11/pgi/13.2-0/mvapich2/1.8]
Error 2
In looking at ...fortran/test/./tH5F_F03.f90 I see that there is a RETURN
statement at the top of the subroutine with a comment indicating that there is
a PGI bug. How do I disable the compilation of this unusable test?
This is how I am configuring it:
export CC=mpicc
export CXX=mpicxx
export F77=mpif90
export F90=mpif90
export FC=mpif90
export LDFLAGS=" -Wl,--rpath
-Wl,/mnt/lfs2/projects/jetmgmt/Christopher.W.Harrop/bass/opt/szip/2.1/gnu/4.4.6/lib"
./configure
--with-szlib=/mnt/lfs2/projects/jetmgmt/Christopher.W.Harrop/bass/opt/szip/2.1/gnu/4.4.6
--enable-parallel --enable-fortran --enable-fortran2003 --enable-shared
--prefix=/mnt/lfs2/projects/jetmgmt/Christopher.W.Harrop/bass/opt/hdf5-mvapich2/1.8.11/pgi/13.2-0/mvapich2/1.8
This does not occur when I build HDF5 without parallel support.
Let me know if I did not supply enough information.
Chris
-----------------------------------------------------------------------------------------------------------
Christopher W. Harrop email:
[email protected]
Global Systems Division
voice: (303) 497-6808
NOAA Earth System Research Laboratory fax: (303)
497-7259
325 Broadway R/GSD2
Boulder, CO 80303
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