Hi
I am reading string data from my h5 file sequentially. But some how it fails on
the second reading.Error message is:
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: ../../src/H5Dio.c line 174 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: ../../src/H5Dio.c line 324 in H5D_read(): unable to set up type info
major: Dataset
minor: Unable to initialize object
#002: ../../src/H5Dio.c line 738 in H5D_typeinfo_init(): unable to convert
between src and dest datatype
major: Dataset
minor: Feature is unsupported
#003: ../../src/H5T.c line 4449 in H5T_path_find(): no appropriate function
for conversion path
major: Datatype
minor: Unable to initialize object
I can read the string , which failed, individually. But when I try read them
sequentially from same object I got the error when I read the second string.
Thank you.
Reader::Reader( std::string lib_name )
{
_hdf5_strtype = H5Tcopy( H5T_C_S1 );
_hdf5_status = H5Tset_size( _hdf5_strtype, 1300 );
_hdf5_file_id = H5Fopen( lib_name.c_str(), H5F_ACC_RDWR, H5P_DEFAULT );
if ( _hdf5_file_id < 0 )
{
cout << "Cannot open template library HDF5 file" << endl;
exit(EXIT_FAILURE);
}
}
int Reader::SetFasta( std::string tpl_name )
{
char dset[1300] = "";
if ( H5Lexists( _hdf5_file_id, tpl_name.c_str(), H5P_DEFAULT ) )
{
_hdf5_group_id = H5Gopen2( _hdf5_file_id, tpl_name.c_str(), H5P_DEFAULT );
_hdf5_dataset_id = H5Dopen2( _hdf5_group_id,"Fasta_seq", H5P_DEFAULT );
_hdf5_status = H5Dread( _hdf5_dataset_id, _hdf5_strtype, H5S_ALL, H5S_ALL,
H5P_DEFAULT, dset );
_hdf5_fasta = dset;
return _hdf5_group_id;
}_______________________________________________
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