Ekin, Thank you for checking! It looks like the script has an issue on your system. I'll enter a bug report.
Elena ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Elena Pourmal The HDF Group http://hdfgroup.org 1800 So. Oak St., Suite 203, Champaign IL 61820 217.531.6112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ On May 15, 2014, at 3:02 PM, Ekin Akoglu <[email protected]> wrote: > Dear Elena, > > Running ./run-fortran-ex.sh gives a similar error: > > ################# h5_crtdat ################# > ./run-fortran-ex.sh: 57: ./run-fortran-ex.sh: ../../..//bin/h5fc: not found > messed up compiling h5_crtdat.f90 > rm: cannot remove `*.o': No such file or directory > rm: cannot remove `*.h5': No such file or directory > > However, I checked and h5fc is in my PATH. > > Thank you. > > Ekin > > > On 15 May 2014 21:35, Elena Pourmal <[email protected]> wrote: > Ekin, > > On May 15, 2014, at 1:42 PM, Ekin Akoglu <[email protected]> wrote: > >> Dear Elena, >> >> Changing to the directory hdf5-1.8.13/fortran/examples and then issuing >> >> $ h5fc -o h5_crtdat h5_crtdat.f90 >> >> works. However, the check-install complains about not being able to open >> h5_crtdat.o to write, which already exists. I checked the permissions of >> that file and they are correct: 644, so write is allowed. >> >> Do you have an idea? >> > No idea at this point. We couldn't reproduce the problem here on one of our > machines with Intel Fortran compiler. > > Could you please try to run run-fortran-ex.sh in that directory? > > ./run-fortran-ex.sh > > Thank you! > > Elena >> Thank you, >> >> Ekin >> >> >> On 15 May 2014 19:47, Elena Pourmal <[email protected]> wrote: >> Ekin, >> >> It looks like that for some reason Fortran compiler cannot write *.o file. >> Could it be that you ran out of space? Is there quota on your system? Was >> /tmp partition full? >> >> I would try to run make check-install the second time, or go to >> /usr/local/hdf5-1.8.13/share/hdf5_examples/fortran and try to run the >> following command >> >> ../../../bin/h5fc -o h5_crtdat h5_crtdat.f90 >> >> and see if it works. >> >> Elena >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> Elena Pourmal The HDF Group http://hdfgroup.org >> 1800 So. Oak St., Suite 203, Champaign IL 61820 >> 217.531.6112 >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> >> >> >> >> On May 15, 2014, at 10:30 AM, Ekin Akoglu <[email protected]> wrote: >> >>> Dear Elena, >>> >>> The OS is 64-bit Debian Wheezy 7.5. The compiler is Intel Fortran Compiler >>> 2013 SP1 Update 3, which is exactly 14.0.3 20140422. My GCC version is >>> 4.7.2. I built and installed HDF5 as follows: >>> >>> $ ./configure --prefix=/usr/local/hdf5-1.8.13 --enable-fortran >>> --enable-fortran2003 >>> $ make >>> $ make check >>> # make install >>> $ make check-install >>> >>> Everything except the "make check-install" step worked flawlessly. >>> >>> Thank you. >>> >>> Kind regards, >>> >>> Ekin >>> >>> On 15 May 2014 17:11, Elena Pourmal <[email protected]> wrote: >>> Ekin, >>> >>> Could you please provide OS and compiler information? It would also help if >>> you post the outputs of the commands used to build and install the HDF5 >>> libraries. >>> >>> Thank you! >>> >>> Elena >>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >>> Elena Pourmal The HDF Group http://hdfgroup.org >>> 1800 So. Oak St., Suite 203, Champaign IL 61820 >>> 217.531.6112 >>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >>> >>> >>> >>> >>> On May 15, 2014, at 9:10 AM, Ekin Akoglu <[email protected]> wrote: >>> >>>> Dear all, >>>> >>>> I have just installed the HDF5 version 1.8.13 and the check-install >>>> process failed with: >>>> >>>> ============================ >>>> Testing run-fortran-ex.sh >>>> ============================ >>>> >>>> ################# h5_crtdat ################# >>>> error: can't open file h5_crtdat.o for write >>>> compilation aborted for h5_crtdat.f90 (code 1) >>>> messed up compiling h5_crtdat.f90 >>>> rm: cannot remove `*.o': No such file or directory >>>> rm: cannot remove `*.h5': No such file or directory >>>> >>>> make[3]: *** [installcheck-local] Error 1 >>>> make[3]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran/examples' >>>> make[2]: *** [installcheck-local] Error 1 >>>> make[2]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran' >>>> make[1]: *** [installcheck-recursive] Error 1 >>>> make[1]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran' >>>> make: *** [installcheck-recursive] Error 1 >>>> >>>> Regards, >>>> >>>> Ekin >>>> >>>> On 15 May 2014 15:20, <[email protected]> wrote: >>>> >>>> >>>> To view from a browser see: >>>> http://www.hdfgroup.org/newsletters/newsletter140.html >>>> >>>> -------------------------------------------------------------------------- >>>> The HDF Group Home Page: http://www.hdfgroup.org/ >>>> Support Services: http://www.hdfgroup.org/services/ >>>> -------------------------------------------------------------------------- >>>> >>>> Newsletter #140 >>>> May 15, 2014 >>>> >>>> CONTENTS >>>> . Release of HDF5-1.8.13 >>>> >>>> - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - >>>> >>>> Release of HDF5 1.8.13 >>>> ====================== >>>> >>>> The HDF5-1.8.13 release is now available, and can be downloaded from the >>>> HDF Group Downloads page: >>>> >>>> http://www.hdfgroup.org/downloads/ >>>> >>>> It can also be obtained directly from: >>>> >>>> http://www.hdfgroup.org/HDF5/release/obtain5.html >>>> >>>> HDF5-1.8.13 is a minor release, with a few new features and changes. >>>> Important changes include: >>>> >>>> o The H5free_memory (C) api was added to free memory that was allocated >>>> by HDF5 API calls. This was added specifically for Windows, but may be >>>> useful anywhere that the library uses a different memory manager than >>>> the application. >>>> >>>> o New wrappers were added for C++ (many) and Fortran >>>> (h5pset_file_image_f and h5pget_file_image_f). >>>> >>>> o Mac OS X 10.9 Mavericks is now supported. >>>> >>>> o Many improvements were added in support of CMake, including the >>>> addition of support for CMake 2.8.11. >>>> >>>> o Improvements were added to the Core VFD (or Memory VFD). >>>> >>>> o The following changes were made to Parallel HDF5: >>>> >>>> - The MPI-POSIX VFD was removed. Application developers should >>>> always use the MPI-IO VFD. >>>> >>>> - Parallel HDF5 now supports collective I/O on point selections. >>>> >>>> o A few changes were added to the tools (h5diff, h5dump, and h5repack). >>>> >>>> This release contains many other changes that are not listed here. >>>> Please be sure to read the Release Notes for a comprehensive list of >>>> new features and changes: >>>> >>>> http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.13-RELEASE.txt >>>> >>>> Changes that affect maintainers of HDF5-dependent applications are >>>> listed in "HDF5 Software Changes from Release to Release". See: >>>> >>>> http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html >>>> >>>> >>>> >>>> Future Changes to Supported Platforms >>>> ------------------------------------- >>>> >>>> Please be aware that after this release, we will be moving to >>>> CMake 3.0, and will add testing for VS 2013. VS 2012 will remain >>>> the standard. >>>> >>>> In addition, we will only support Cygwin built with CMake, and will >>>> be dropping VS 2010. >>>> >>>> >>>> >>>> ------------------------------------------------------------- >>>> For questions regarding these or other HDF issues, contact: >>>> >>>> [email protected] >>>> >>>> >>>> _______________________________________________ >>>> Hdf-forum is for HDF software users discussion. >>>> [email protected] >>>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >>>> >>>> _______________________________________________ >>>> Hdf-forum is for HDF software users discussion. >>>> [email protected] >>>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >>> >>> >>> _______________________________________________ >>> Hdf-forum is for HDF software users discussion. >>> [email protected] >>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >>> >>> >>> _______________________________________________ >>> Hdf-forum is for HDF software users discussion. >>> [email protected] >>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> >> >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> >> >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
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