Hi Sean, Thank you for trying with the newly released gcc! I'll add the issue to JIRA; we will try to support gcc 4.9.* in the next release.
As a workaround please try to use different level of optimization (edit the config/gnu-flags file; search for "Production" string and then edit gcc-4.* line). Elena ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Elena Pourmal The HDF Group http://hdfgroup.org 1800 So. Oak St., Suite 203, Champaign IL 61820 217.531.6112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ On May 15, 2014, at 2:45 PM, Sean Byland <[email protected]> wrote: > When building with hdf5/1.8.13 with the following configure line: > ./configure CC=gcc CXX=g++ FC=gfortran --disable-silent-rules > --enable-fortran --enable-fortran2003 --enable-static --with-pic > --disable-sharedlib-rpath --enable-shared --enable-cxx > > With the gcc, g++ and gfortran resolving to gcc/4.9 I see the following > failures: > grep "FAILED" gcc49.check.out > Testing hard signed char -> long double conversions *FAILED* > Testing hard unsigned char -> long double conversions *FAILED* > Testing hard short -> long double conversions *FAILED* > Testing hard unsigned short -> long double conversions *FAILED* > Testing hard int -> long double conversions *FAILED* > Testing hard unsigned int -> long double conversions *FAILED* > Testing hard long -> long double conversions *FAILED* > > Has anyone else observed this ? Is there a workaround. Thanks. > > Sean B. > > From: Elena Pourmal <[email protected]> > Reply-To: HDF Users Discussion List <[email protected]> > Date: Thursday, May 15, 2014 2:35 PM > To: HDF Users Discussion List <[email protected]> > Subject: Re: [Hdf-forum] make check-install fails with HDF5 1.8.13 > > Ekin, > > On May 15, 2014, at 1:42 PM, Ekin Akoglu <[email protected]> wrote: > >> Dear Elena, >> >> Changing to the directory hdf5-1.8.13/fortran/examples and then issuing >> >> $ h5fc -o h5_crtdat h5_crtdat.f90 >> >> works. However, the check-install complains about not being able to open >> h5_crtdat.o to write, which already exists. I checked the permissions of >> that file and they are correct: 644, so write is allowed. >> >> Do you have an idea? >> > No idea at this point. We couldn't reproduce the problem here on one of our > machines with Intel Fortran compiler. > > Could you please try to run run-fortran-ex.sh in that directory? > > ./run-fortran-ex.sh > > Thank you! > > Elena >> Thank you, >> >> Ekin >> >> >> On 15 May 2014 19:47, Elena Pourmal <[email protected]> wrote: >>> Ekin, >>> >>> It looks like that for some reason Fortran compiler cannot write *.o file. >>> Could it be that you ran out of space? Is there quota on your system? Was >>> /tmp partition full? >>> >>> I would try to run make check-install the second time, or go to >>> /usr/local/hdf5-1.8.13/share/hdf5_examples/fortran and try to run the >>> following command >>> >>> ../../../bin/h5fc -o h5_crtdat h5_crtdat.f90 >>> >>> and see if it works. >>> >>> Elena >>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >>> Elena Pourmal The HDF Group http://hdfgroup.org >>> 1800 So. Oak St., Suite 203, Champaign IL 61820 >>> 217.531.6112 >>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >>> >>> >>> >>> >>> On May 15, 2014, at 10:30 AM, Ekin Akoglu <[email protected]> wrote: >>> >>>> Dear Elena, >>>> >>>> The OS is 64-bit Debian Wheezy 7.5. The compiler is Intel Fortran Compiler >>>> 2013 SP1 Update 3, which is exactly 14.0.3 20140422. My GCC version is >>>> 4.7.2. I built and installed HDF5 as follows: >>>> >>>> $ ./configure --prefix=/usr/local/hdf5-1.8.13 --enable-fortran >>>> --enable-fortran2003 >>>> $ make >>>> $ make check >>>> # make install >>>> $ make check-install >>>> >>>> Everything except the "make check-install" step worked flawlessly. >>>> >>>> Thank you. >>>> >>>> Kind regards, >>>> >>>> Ekin >>>> >>>> On 15 May 2014 17:11, Elena Pourmal <[email protected]> wrote: >>>>> Ekin, >>>>> >>>>> Could you please provide OS and compiler information? It would also help >>>>> if you post the outputs of the commands used to build and install the >>>>> HDF5 libraries. >>>>> >>>>> Thank you! >>>>> >>>>> Elena >>>>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >>>>> Elena Pourmal The HDF Group http://hdfgroup.org >>>>> 1800 So. Oak St., Suite 203, Champaign IL 61820 >>>>> 217.531.6112 >>>>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >>>>> >>>>> >>>>> >>>>> >>>>> On May 15, 2014, at 9:10 AM, Ekin Akoglu <[email protected]> wrote: >>>>> >>>>>> Dear all, >>>>>> >>>>>> I have just installed the HDF5 version 1.8.13 and the check-install >>>>>> process failed with: >>>>>> >>>>>> ============================ >>>>>> Testing run-fortran-ex.sh >>>>>> ============================ >>>>>> >>>>>> ################# h5_crtdat ################# >>>>>> error: can't open file h5_crtdat.o for write >>>>>> compilation aborted for h5_crtdat.f90 (code 1) >>>>>> messed up compiling h5_crtdat.f90 >>>>>> rm: cannot remove `*.o': No such file or directory >>>>>> rm: cannot remove `*.h5': No such file or directory >>>>>> >>>>>> make[3]: *** [installcheck-local] Error 1 >>>>>> make[3]: Leaving directory >>>>>> `/home/ekin/Tools/hdf5-1.8.13/fortran/examples' >>>>>> make[2]: *** [installcheck-local] Error 1 >>>>>> make[2]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran' >>>>>> make[1]: *** [installcheck-recursive] Error 1 >>>>>> make[1]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran' >>>>>> make: *** [installcheck-recursive] Error 1 >>>>>> >>>>>> Regards, >>>>>> >>>>>> Ekin >>>>>> >>>>>> On 15 May 2014 15:20, <[email protected]> wrote: >>>>>>> >>>>>>> >>>>>>> To view from a browser see: >>>>>>> http://www.hdfgroup.org/newsletters/newsletter140.html >>>>>>> >>>>>>> -------------------------------------------------------------------------- >>>>>>> The HDF Group Home Page: http://www.hdfgroup.org/ >>>>>>> Support Services: >>>>>>> http://www.hdfgroup.org/services/ >>>>>>> -------------------------------------------------------------------------- >>>>>>> >>>>>>> Newsletter #140 >>>>>>> May 15, 2014 >>>>>>> >>>>>>> CONTENTS >>>>>>> . Release of HDF5-1.8.13 >>>>>>> >>>>>>> - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - >>>>>>> - - >>>>>>> >>>>>>> Release of HDF5 1.8.13 >>>>>>> ====================== >>>>>>> >>>>>>> The HDF5-1.8.13 release is now available, and can be downloaded from the >>>>>>> HDF Group Downloads page: >>>>>>> >>>>>>> http://www.hdfgroup.org/downloads/ >>>>>>> >>>>>>> It can also be obtained directly from: >>>>>>> >>>>>>> http://www.hdfgroup.org/HDF5/release/obtain5.html >>>>>>> >>>>>>> HDF5-1.8.13 is a minor release, with a few new features and changes. >>>>>>> Important changes include: >>>>>>> >>>>>>> o The H5free_memory (C) api was added to free memory that was allocated >>>>>>> by HDF5 API calls. This was added specifically for Windows, but may >>>>>>> be >>>>>>> useful anywhere that the library uses a different memory manager than >>>>>>> the application. >>>>>>> >>>>>>> o New wrappers were added for C++ (many) and Fortran >>>>>>> (h5pset_file_image_f and h5pget_file_image_f). >>>>>>> >>>>>>> o Mac OS X 10.9 Mavericks is now supported. >>>>>>> >>>>>>> o Many improvements were added in support of CMake, including the >>>>>>> addition of support for CMake 2.8.11. >>>>>>> >>>>>>> o Improvements were added to the Core VFD (or Memory VFD). >>>>>>> >>>>>>> o The following changes were made to Parallel HDF5: >>>>>>> >>>>>>> - The MPI-POSIX VFD was removed. Application developers should >>>>>>> always use the MPI-IO VFD. >>>>>>> >>>>>>> - Parallel HDF5 now supports collective I/O on point selections. >>>>>>> >>>>>>> o A few changes were added to the tools (h5diff, h5dump, and h5repack). >>>>>>> >>>>>>> This release contains many other changes that are not listed here. >>>>>>> Please be sure to read the Release Notes for a comprehensive list of >>>>>>> new features and changes: >>>>>>> >>>>>>> http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.13-RELEASE.txt >>>>>>> >>>>>>> Changes that affect maintainers of HDF5-dependent applications are >>>>>>> listed in "HDF5 Software Changes from Release to Release". See: >>>>>>> >>>>>>> http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html >>>>>>> >>>>>>> >>>>>>> >>>>>>> Future Changes to Supported Platforms >>>>>>> ------------------------------------- >>>>>>> >>>>>>> Please be aware that after this release, we will be moving to >>>>>>> CMake 3.0, and will add testing for VS 2013. VS 2012 will remain >>>>>>> the standard. >>>>>>> >>>>>>> In addition, we will only support Cygwin built with CMake, and will >>>>>>> be dropping VS 2010. >>>>>>> >>>>>>> >>>>>>> >>>>>>> ------------------------------------------------------------- >>>>>>> For questions regarding these or other HDF issues, contact: >>>>>>> >>>>>>> [email protected] >>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Hdf-forum is for HDF software users discussion. >>>>>>> [email protected] >>>>>>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >>>>>> >>>>>> _______________________________________________ >>>>>> Hdf-forum is for HDF software users discussion. >>>>>> [email protected] >>>>>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >>>>> >>>>> >>>>> _______________________________________________ >>>>> Hdf-forum is for HDF software users discussion. >>>>> [email protected] >>>>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >>>>> >>>> >>>> _______________________________________________ >>>> Hdf-forum is for HDF software users discussion. >>>> [email protected] >>>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >>> >>> >>> _______________________________________________ >>> Hdf-forum is for HDF software users discussion. >>> [email protected] >>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >>> >> >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
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