Thanks Elena, the git version did the trick. Much appreciated. ______________________________________________ Tim Stitt PhD User Support Manager (CRC) Research Assistant Professor (Computer Science & Engineering) Room 108, Center for Research Computing, University of Notre Dame, IN 46556 Email: [email protected]<mailto:[email protected]>
From: Elena Pourmal <[email protected]<mailto:[email protected]>> Reply-To: HDF Users Discussion List <[email protected]<mailto:[email protected]>> Date: Thursday, May 15, 2014 at 3:45 PM To: HDF Users Discussion List <[email protected]<mailto:[email protected]>> Subject: Re: [Hdf-forum] undefined reference to `H5Pset_fapl_mpiposix' MPI POSIX VFD was removed from HDF5 1.8.13. We submitted a patch to netCDF folks. See https://github.com/Unidata/netcdf-c/commit/435d8a03ed28bb5ad63aff12cbc6ab91531b6bc8 Elena ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Elena Pourmal The HDF Group http://hdfgroup.org 1800 So. Oak St., Suite 203, Champaign IL 61820 217.531.6112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ On May 15, 2014, at 2:09 PM, Timothy Stitt <[email protected]<mailto:[email protected]>> wrote: HDF Forum, I’m actually trying to build NETCDF-4 (with parallel I/O) but I keep running into the following link error which appears to be related to HDF5 v1.8.13: libtool: link: mpicc -g -O2 -o ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o -L/afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib/<http://crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib/> ../liblib/.libs/libnetcdf.a /afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib/libhdf5_hl.so<http://crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib/libhdf5_hl.so> /afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib/libhdf5.so<http://crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib/libhdf5.so> -lz -ldl -lm -lcurl -Wl,-rpath -Wl,/afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib<http://crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib> -Wl,-rpath -Wl,/afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib<http://crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib> ../liblib/.libs/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `nc4_open_file': /afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/netcdf-4.3.2/libsrc4/nc4file.c:2174:<http://crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/netcdf-4.3.2/libsrc4/nc4file.c:2174:> undefined reference to `H5Pset_fapl_mpiposix’ I have built HDF5 v1.8.13 using MPICH v3 and GCC v4.4.7 on a RHEL6 Linux system. My HDF5 configure options are as follows: ./configure --prefix=/my/install/path CC=mpicc FC=mpif90 CXX=mpicxx --enable-static --enable-shared --enable-parallel Is there something I am doing wrong that prevents H5Pset_fapl_mpiposix from being built? Thanks in advance, Tim. _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected]<mailto:[email protected]> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
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