Hello Ahsan,
We can reproduce the issue and will enter a bug report for this.
The problem is that h5import has not been built yet when the tests are
being run.
If you run 'make check' and then 'make install', then the tests should
complete properly.
-Barbara
[email protected]
On Tue, 12 Aug 2014, Syed Ahsan Ali Bokhari wrote:
Dear George
Thank you for your reply. I didn't have red hat subscription that is why I
switched to CentOS6.5 and this time I upgraded gcc using devtoolset
gcc-4.8.2. The issue is that I want to install netcdf with netcdf4 support
which needs zlib and hdf to be compiled first. I installed zlib first and
then I tried to compile hdf specifying the zlib directory
./configure --with-zlib=/opt/zlib-1.2.8/ --prefix=/opt/hdf5-1.8.13
(config.log) is attached.
the make process again crashes at the end during tests. Please see attached
make.out.
Thank you for your help.
Ahsan
On Thu, Aug 7, 2014 at 3:47 PM, George N. White III <[email protected]>
wrote:
On Thu, Aug 7, 2014 at 1:33 AM, Syed Ahsan Ali Bokhari <
[email protected]> wrote:
I have tried different versions of HDF but compilation fails for all.
Please have a look at attcched log files. Following are the commands I use
to compile
Unless you have specific software that requires an older version of the
hdf5 libraries I suggest you spend less time trying
old versions and more time investigating the problems building the current
version. Otherwise you end up rediscovering bugs that have been fixed in
more recent hdf5 versions.
You appear to have installed gcc-4.9.1. Providing a complete development
environment for Red Hat systems requires
more than just installing the compiler. RH has done this work for you
with the devtoolset software collections. I have been using the devtoolset
compilers to build large systems that use hdf5 libraries with few problems
and excellent reliability in use. You can get free (unsupported) clone
packages from CERN Scientific Linux <
http://linux.web.cern.ch/linux/devtoolset/>. These rpms can be installed
in real RHEL 5+6, CentOS 5+6, and SL 5+6 , and probably Oracle Linux 5+6.
I think Cmake is more robust than GNU configure.
./configure --with-zlib=/opt/zlib-1.2.8/ --prefix=/opt/hdf5-1.8.9
make check install
th5s.c:734:9: error: expected expression before â/â token
// CHECK(ret, FAIL, "H5Pset_alloc_time");
^
In file included from th5s.c:25:0:
th5s.c: At top level:
H5srcdir.h:38:20: warning: âH5_get_srcdir_filenameâ defined but not used
[-Wunused-function]
static const char *H5_get_srcdir_filename(const char *filename)
^
H5srcdir.h:68:20: warning: âH5_get_srcdirâ defined but not used
[-Wunused-function]
static const char *H5_get_srcdir(void)
^
make[1]: *** [th5s.o] Error 1
make: *** [check-recursive] Error 1
Thank you for your help!
--
Syed Ahsan Ali Bokhari
Electronic Engineer
Research & Development Division
Pakistan Meteorological Department H-8/2, Islamabad.
Phone # off +92519250361
Cell # +923155145014
Fax # +92519250368
www.pmd.gov.pk
--
Syed Ahsan Ali Bokhari
Electronic Engineer
Research & Development Division
Pakistan Meteorological Department H-8/2, Islamabad.
Phone # off +92519250361
Cell # +923155145014
Fax # +92519250368
www.pmd.gov.pk
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
--
George N. White III <[email protected]>
Head of St. Margarets Bay, Nova Scotia
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
--
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
