I have installed h5py 2.5.0 with mpi switched on.
I used:
export CC=mpicc
python3 setup.py configure --mpi
python3 setup.py build
python3 setup.py install --prefix=/clusterdata/afylot/local/
(python3 is alias for python 3.4)
When I import h5py from ipython3 I get
ImportError:
/clusterdata/afylot/local/lib64/python3.4/site-packages/h5py-2.5.0-py3.4-linux-x86_64.egg/h5py/
defs.cpython-34m.so: undefined symbol: H5Pget_fapl_mpio
I have checked is mpi is enable by running configure:
python3 setup.py configure
--hdf5=/clusterdata/afylot/local/hdf5-1.8.14/hdf5/lib/ --mpi
running configure
Autodetected HDF5 1.8.14
********************************************************************************
Summary of the h5py configuration
Path to HDF5: '/clusterdata/afylot/local/hdf5-1.8.14/hdf5/lib/'
HDF5 Version: '1.8.14'
MPI Enabled: True
Rebuild Required: False
********************************************************************************
Any idea welcome!
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