I am compiling h5py v 2.5.0 on my linux cluster, with hdf5 v 1.8.14, mpi4py v1.3.1, Cythonv0.22 and python3.3.2. I have compiled h5py many times with other version of python (example 3.3.6 and 2.7.8). I get an error at build time. The command I am using and the error are shown below:
export CC=mpicc python3 setup.py configure --hdf5=/clusterdata/afylot/local/ --mpi python3 setup.py build mpicc -shared build/temp.linux-x86_64-3.3/clusterdata/afylot/download/h5py-2.5.0/h5py/defs.o -L/clusterdata/afylot/local/lib -L/opt/local/lib -L/usr/local/lib -R/clusterdata/afylot/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.linux-x86_64-3.3/h5py/defs.cpython-33m.so gcc: error: unrecognized command line option ‘-R’ gcc: error: unrecognized command line option ‘-R’ gcc: error: unrecognized command line option ‘-R’ error: command 'mpicc' failed with exit status 1
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